Pairwise Alignments

Query, 736 a.a., histidine kinase from Vibrio cholerae E7946 ATCC 55056

Subject, 1236 a.a., sensory box histidine kinase/response regulator (RefSeq) from Shewanella amazonensis SB2B

 Score =  226 bits (575), Expect = 7e-63
 Identities = 131/330 (39%), Positives = 196/330 (59%), Gaps = 5/330 (1%)

Query: 343  LEAEKVKAQASTKAKSAFLATLSHEIRTPMNGVLGTAQILLKDELTSKQRQHLTSLYESG 402
            LEA K  A+ +   KS FLA +SHEIRTPMN ++G  Q+  +  LT +Q+ +L     S 
Sbjct: 709  LEA-KQDAELANLYKSEFLANMSHEIRTPMNAIIGMLQLAGRTSLTEQQKDYLDKASFSA 767

Query: 403  EHMMSLLNEILDYSKIEQGKFELDHSAFPLKSIIGSIKSIYSSLCVEKGLKFQLNSEITD 462
            + ++ ++N+ILD+SKIE GK EL+  AFPL  ++     + +    EKG++  L + ++ 
Sbjct: 768  QSLLRIINDILDFSKIEAGKLELEKVAFPLDKVLDHSLDLNALRAQEKGIELLLYAPVSA 827

Query: 463  GRWYYGDKARLRQIIFNLLSNAVKFTEAGFVAIGLSEESCDEENYLIIK--VQDTGIGIA 520
            G    GD  RL Q++ NLLSNAVKFT+ G + +G  E+  + ++ + +K  V+DTGIGI+
Sbjct: 828  GIMLKGDPLRLGQVLINLLSNAVKFTQNGEIELG-CEDVGERDHRITLKFWVRDTGIGIS 886

Query: 521  QESLGRIFRPFEQAESHTTRRFGGTGLGLAIVKQIAELMNGTVLVQSEVGQGSCFKVRVK 580
            +E   ++F  F QA+  TTR++GGTGLGL+I K +  +M GT+ V+SE G GS F   V 
Sbjct: 887  REQQDKLFDAFAQADGSTTRKYGGTGLGLSISKHLVSMMGGTMQVESEPGVGSTFSFTVS 946

Query: 581  LAITEPVTEDVKPTKAKTYPGLRVLIVEDNRTNIMILEAFMRNKGFECHSVMDGVQAITA 640
              I E   + V     +    LR L+V+DN T + I  + MR+  FE  +   G +A+  
Sbjct: 947  FEIAEE-AKVVPMVVPERLASLRTLVVDDNPTALQIYSSVMRDFHFEVETASTGAEALYK 1005

Query: 641  LQESSFDLVLMDNHMPLKDGIQATREIRQL 670
            L +   DLVL+D  MP  DGIQ    I ++
Sbjct: 1006 LCKQQVDLVLLDWMMPEMDGIQVIDAIDEM 1035



 Score = 60.5 bits (145), Expect = 5e-13
 Identities = 35/109 (32%), Positives = 59/109 (54%), Gaps = 1/109 (0%)

Query: 604  VLIVEDNRTNIMILEAFMRNKGFECHSVMDGVQAITALQESSFDLVLMDNHMPLKDGIQA 663
            VL+VEDN  N  +    +++ G+E     +G  ++  + + S+D +LMD  MP+ DG+ A
Sbjct: 1111 VLLVEDNFINQQVATELLKSAGYEVDVADNGQISLEMVGKRSYDAILMDIQMPVMDGLTA 1170

Query: 664  TREIRQLPLPQAKILLFGCTADVFKDTRDKMLSAGADDIIAKPIAEHEL 712
              E+R+      ++ +   TA      R+K L+AG +  I KPI  +EL
Sbjct: 1171 ATELRK-RYSFDELPIIAMTAHAMSGDREKSLAAGMNAHITKPIVLNEL 1218



 Score = 33.1 bits (74), Expect = 9e-05
 Identities = 14/41 (34%), Positives = 22/41 (53%)

Query: 166 FWSPVYVDPYTRVEMITVSTPYYRNGQFAGVATVDLSLESL 206
           FWS  Y+D   +  + T+  P Y   +F G   +D++L SL
Sbjct: 213 FWSEAYLDSTDKGLLTTLGVPIYLEDEFIGSINLDMTLASL 253