Pairwise Alignments

Query, 736 a.a., histidine kinase from Vibrio cholerae E7946 ATCC 55056

Subject, 1763 a.a., sensory box histidine kinase/response regulator (RefSeq) from Shewanella amazonensis SB2B

 Score =  236 bits (601), Expect = 1e-65
 Identities = 134/371 (36%), Positives = 213/371 (57%), Gaps = 8/371 (2%)

Query: 343  LEAEKVKAQASTKAKSAFLATLSHEIRTPMNGVLGTAQILLKDELTSKQRQHLTSLYESG 402
            L A K  A A+ +AKS FLA +SHEIRTPMN ++G +Q+ L+ EL  KQR ++  +  + 
Sbjct: 1023 LMAAKEDADAANQAKSDFLANMSHEIRTPMNAIIGMSQLCLQTELDRKQRNYVEKIERAS 1082

Query: 403  EHMMSLLNEILDYSKIEQGKFELDHSAFPLKSIIGSIKSIYSSLCVEKGLKFQLNSEITD 462
            + ++ ++N+ILD+SKIE GK +++   F L +I+  +  ++S    +K L+   +     
Sbjct: 1083 KSLLGIINDILDFSKIEAGKLDIEVVPFQLDTILEDLGDMFSVKAADKQLELLFSVAPGV 1142

Query: 463  GRWYYGDKARLRQIIFNLLSNAVKFTEAGFVAIGLSEESCDEEN-YLIIKVQDTGIGIAQ 521
                 GD  RL Q++ NL++NA+KFTE G V + +SE + DE+   L   V+D+GIG+  
Sbjct: 1143 PTHLEGDPLRLSQVLINLMNNAIKFTERGEVMLSISELARDEDQVQLKFAVRDSGIGLTA 1202

Query: 522  ESLGRIFRPFEQAESHTTRRFGGTGLGLAIVKQIAELMNGTVLVQSEVGQGSCFKVRVKL 581
            E   ++F+ F QA++ TTR++GGTGLGLAI KQ+ ELM G + V S+ G GS F   V +
Sbjct: 1203 EQQAKLFKSFSQADTSTTRKYGGTGLGLAICKQLVELMGGEIGVDSQFGNGSTFYFTVSV 1262

Query: 582  AITEPVTEDVKPTKAKTYPGLRVLIVEDNRTNIMILEAFMRNKGFECHSVMDGVQAITAL 641
             + +    +V+    +   G+ VL+V+DN T   IL   +++ GF   S   G++A+   
Sbjct: 1263 KVAQNAQLNVE----QELEGMAVLVVDDNSTARDILRTTLQSMGFSVDSARSGMEALEKC 1318

Query: 642  QESSFDLVLMDNHMPLKDGIQATREIRQLPLPQAKILLFGCTADVFKDTRDKMLSAGADD 701
             E  + + L+D  MP  DG +    +R+L  P    L+   +A    +  DK+   G + 
Sbjct: 1319 AERDYRIALIDWKMPEMDGTETAARMRELKQPP---LILMVSAHANSEFIDKVEEMGING 1375

Query: 702  IIAKPIAEHEL 712
             I KPI+   L
Sbjct: 1376 YITKPISASRL 1386



 Score = 81.6 bits (200), Expect = 3e-19
 Identities = 53/138 (38%), Positives = 74/138 (53%), Gaps = 4/138 (2%)

Query: 585  EPVTEDVKPTKAKTYPGL---RVLIVEDNRTNIMILEAFMRNKGFECHSVMDGVQAITAL 641
            +PV    +P  A+   GL   R+L+VEDN  N  +   F+   G       +G  A+  L
Sbjct: 1400 KPVRRKAQPMDAQKLSGLKGKRILLVEDNEMNQEVASEFLEQVGVVLSIADNGQIALEKL 1459

Query: 642  QESSFDLVLMDNHMPLKDGIQATREIRQLPLPQAKILLFGCTADVFKDTRDKMLSAGADD 701
             + SFDLVLMD  MP+ DG QATRE+R+LP   A++ +   TA+     ++  L AG +D
Sbjct: 1460 GQQSFDLVLMDCQMPVMDGYQATRELRKLP-GLAELPVVAMTANAMAGDKEMCLLAGMND 1518

Query: 702  IIAKPIAEHELDMALEQH 719
             IAKPI    L   L Q+
Sbjct: 1519 HIAKPIEVGILYQTLLQY 1536



 Score = 33.9 bits (76), Expect = 7e-05
 Identities = 20/54 (37%), Positives = 31/54 (57%), Gaps = 2/54 (3%)

Query: 153 WYLAAEREAEGLYFWSPVYVDPYTRVEMITVSTPYYRNGQFAGVATVDLSLESL 206
           W+  A +  +G Y+ +P Y D    ++MIT S P + + +  GV T DL+L SL
Sbjct: 156 WWTEALKRPKG-YWTAPYYDDGAGNIQMITFSQP-FGDEEPLGVVTTDLALSSL 207