Pairwise Alignments

Query, 736 a.a., histidine kinase from Vibrio cholerae E7946 ATCC 55056

Subject, 1287 a.a., signal transduction histidine kinase-like protein (RefSeq) from Shewanella amazonensis SB2B

 Score =  228 bits (581), Expect = 2e-63
 Identities = 136/382 (35%), Positives = 218/382 (57%), Gaps = 15/382 (3%)

Query: 349 KAQASTKAKSAFLATLSHEIRTPMNGVLGTAQILLKDELTSKQRQHLTSLYESGEHMMSL 408
           +A  +++AKS FLA +SHEIRTPMN VLG  Q+ L+ EL  + R +L    ++ + +++L
Sbjct: 529 QALQASRAKSDFLANMSHEIRTPMNAVLGLLQMTLQTELPPRPRDYLEKTQQAAKSLLAL 588

Query: 409 LNEILDYSKIEQGKFELDHSAFPLKSIIGSIKSIYSSLCVEKGLK--FQLNSEITDGRWY 466
           LN+ILD+SKIE G+ EL+   F L+ ++G + SI SS   +K ++  +Q+   + D    
Sbjct: 589 LNDILDFSKIEAGRIELERQGFSLQQLLGDMGSILSSQVQQKDIELVYQVAPSVPD--QL 646

Query: 467 YGDKARLRQIIFNLLSNAVKFTEAGFVAIGLSEESCDEEN-YLIIKVQDTGIGIAQESLG 525
            GD  RLRQI+ N+L+NA+KFTE G +   +  +  D+   +L I++QD+GIG+  E   
Sbjct: 647 IGDSLRLRQILLNVLTNAIKFTEKGDIITRIDADLGDDGTCHLHIEIQDSGIGMTNEQQA 706

Query: 526 RIFRPFEQAESHTTRRFGGTGLGLAIVKQIAELMNGTVLVQSEVGQGSCFKVRVKLAITE 585
            IF+ F QA+S  +RR+GGTGLGLAI +++  LM G + V S  G GS F + V+L    
Sbjct: 707 IIFKGFSQADSSISRRYGGTGLGLAITRELVHLMQGEIRVTSSPGVGSTFTIDVQLGF-- 764

Query: 586 PVTEDVKPTKAKTYPGLRVLIVEDNRTNIMILEAFMRNKGFECHSVMDGVQAITALQE-- 643
              +  K      + G+RVL+VEDN T+ ++    +R+ G E  ++ +G+ A+  ++   
Sbjct: 765 ---DATKYRPGARFSGVRVLLVEDNHTSRLVFSELLRDLGCEVTALNNGLTAMKTIERMA 821

Query: 644 -SSFDLVLMDNHMPLKDGIQATREIRQLP--LPQAKILLFGCTADVFKDTRDKMLSAGAD 700
             SFD++L D  +P  DG++    IR L     Q  I++    +    + + K      D
Sbjct: 822 PDSFDVLLADWQLPGLDGLELASWIRHLDSLSRQPGIIIVTAFSQAMLEAQLKHREEEFD 881

Query: 701 DIIAKPIAEHELDMALEQHSER 722
             + KP+    +   L+   ER
Sbjct: 882 ATLIKPVTREMVSRCLQSVLER 903



 Score = 70.9 bits (172), Expect = 4e-16
 Identities = 44/124 (35%), Positives = 63/124 (50%), Gaps = 1/124 (0%)

Query: 596  AKTYPGLRVLIVEDNRTNIMILEAFMRNKGFECHSVMDGVQAITALQESSFDLVLMDNHM 655
            A +  G R+L+VEDN TN ++  + +   G E    +DG QA+  L    FDLVLMD  M
Sbjct: 918  APSLVGRRLLLVEDNATNRLVATSLLGQLGAEVIEAVDGFQALKLLSRQQFDLVLMDIQM 977

Query: 656  PLKDGIQATREIRQLPLPQAKILLFGCTADVFKDTRDKMLSAGADDIIAKPIAEHELDMA 715
            P  DG Q TR+IR   L    + +   TA+   + +     AG +  I+KP    E+   
Sbjct: 978  PGMDGYQTTRKIRN-ELMLTDLPIIAMTANAMPEDKQACRDAGMNCHISKPFEIDEVATK 1036

Query: 716  LEQH 719
            L Q+
Sbjct: 1037 LLQY 1040