Pairwise Alignments

Query, 736 a.a., histidine kinase from Vibrio cholerae E7946 ATCC 55056

Subject, 1021 a.a., signal transduction histidine kinase-like protein protein (RefSeq) from Shewanella amazonensis SB2B

 Score =  202 bits (515), Expect = 5e-56
 Identities = 109/245 (44%), Positives = 161/245 (65%), Gaps = 3/245 (1%)

Query: 339 KTIYLEAEKVKAQASTKAKSAFLATLSHEIRTPMNGVLGTAQILLKDELTSKQRQHLTSL 398
           K   L   + KA+A+++ K+ FLA +SHEIRTPMNGVLG   +L K EL+ +Q+ +L   
Sbjct: 379 KNADLVEAREKAEAASRIKADFLACMSHEIRTPMNGVLGILSLLEKTELSIQQKHYLDVA 438

Query: 399 YESGEHMMSLLNEILDYSKIEQGKFELDHSAFPLKSIIGSIKSIYSSLCVEKGLKFQLNS 458
             S E +++LLN+ILD+SKIE GKFE+D   F L  ++      ++     KGLK  L+ 
Sbjct: 439 STSAESLLTLLNDILDFSKIESGKFEIDEVPFDLIQLLDDFIQPFAIRAEAKGLKLLLDI 498

Query: 459 EITDGRWYYGDKARLRQIIFNLLSNAVKFTEAGFVAIGL--SEESCDEENYLIIKVQDTG 516
                RW  GD  R+RQ++ NL+SNA+KFTE G++A+ +  SE++ +  + L++ ++DTG
Sbjct: 499 SGIHLRWVRGDPGRIRQVLVNLVSNAIKFTEVGWIAVRVQASEDTANGVS-LMVSIEDTG 557

Query: 517 IGIAQESLGRIFRPFEQAESHTTRRFGGTGLGLAIVKQIAELMNGTVLVQSEVGQGSCFK 576
           IGI+++    +F PF QA+S TTR FGGTGLGL+I K++ ELM+G + V S    GS FK
Sbjct: 558 IGISKDKQEVLFSPFTQADSTTTRHFGGTGLGLSIAKRLCELMDGDIRVISAEDAGSTFK 617

Query: 577 VRVKL 581
             ++L
Sbjct: 618 FHLRL 622



 Score = 83.2 bits (204), Expect = 6e-20
 Identities = 49/129 (37%), Positives = 75/129 (58%), Gaps = 3/129 (2%)

Query: 594 TKAKTYPGLRVLIVEDNRTNIMILEAFMRNKGFE-CHSVMDGVQAITALQESSFDLVLMD 652
           T+++     ++L+VEDN+ N M+    +RN G +    V +G+QA+ ALQ   +DL+LMD
Sbjct: 765 TQSQLNDSAQILLVEDNKVNQMVALGMLRNLGLKHVEVVTNGLQALAALQHRQYDLILMD 824

Query: 653 NHMPLKDGIQATREIRQLPLPQ--AKILLFGCTADVFKDTRDKMLSAGADDIIAKPIAEH 710
             MP  DG QAT+ IR+    Q    I +   TA+  K  R+  L AG +D IAKP+ + 
Sbjct: 825 CLMPEMDGYQATQAIRKGEAGQKHKDIKIVAMTANAMKGDRETCLEAGMNDYIAKPLHQA 884

Query: 711 ELDMALEQH 719
           E+   LE++
Sbjct: 885 EVARVLERY 893