Pairwise Alignments

Query, 736 a.a., histidine kinase from Vibrio cholerae E7946 ATCC 55056

Subject, 1041 a.a., Periplasmic Sensor Hybrid Histidine Kinase (NCBI) from Rhodospirillum rubrum S1H

 Score =  225 bits (573), Expect = 1e-62
 Identities = 142/392 (36%), Positives = 213/392 (54%), Gaps = 30/392 (7%)

Query: 350 AQASTKAKSAFLATLSHEIRTPMNGVLGTAQILLKDELTSKQRQHLTSLYESGEHMMSLL 409
           AQA+ +AK+ FLAT+SHEIRTPMN V+G   +LL   L  +Q  +  ++  SGEH++ L+
Sbjct: 498 AQAAARAKAEFLATMSHEIRTPMNAVIGMTGLLLDGPLEPRQIDYARTIQRSGEHLLGLI 557

Query: 410 NEILDYSKIEQGKFELDHSAFPLKSIIGSIKSIYSSLCVEKGLKFQLNSEITDGRWYYGD 469
           N+ILD+S+I+ G+  L    F L   + ++ S+       K L  +++ +      Y GD
Sbjct: 558 NDILDFSRIDTGRLVLVDRDFSLSHEVQAVVSLCGVAASAKRLSVRIDLDRALAPGYRGD 617

Query: 470 KARLRQIIFNLLSNAVKFTEAGFVAI-GLSEESCDEENYLIIKVQDTGIGIAQESLGRIF 528
             RLRQI+ NL+ NAVKFT+ G V + G   +  ++ ++L ++V DTG GI +E    +F
Sbjct: 618 SQRLRQILVNLVGNAVKFTDKGMVTVQGDVLKIENDIHWLRLRVVDTGCGIPRERFNDLF 677

Query: 529 RPFEQAESHTTRRFGGTGLGLAIVKQIAELMNGTVLVQSEVGQGSCFKVRVKLAI----- 583
             F+Q +   TR  GGTGLGLAI +++A LM G + V S  G+GS F V V +       
Sbjct: 678 AAFQQLDGSATRTHGGTGLGLAISRKLARLMGGDITVSSTPGEGSVFSVVVPMVPLSRTP 737

Query: 584 --------------TEPVTEDVKPTKAKTYPGLRVLIVEDNRTNIMILEAFMRNKGFECH 629
                          EP   DV PT+A     L VL+ ED   N ++++A +  +G    
Sbjct: 738 APDGTLGDGDAERGEEPPAADV-PTEAAASRALVVLVAEDILENQILVQAVLEKQGHRVI 796

Query: 630 SVMDGVQAITALQESS-FDLVLMDNHMPLKDGIQATREIRQLP--------LPQAKILLF 680
              +G +A+  L+ +   D+VLMD  MP+ DG+ A R IR LP         P A + + 
Sbjct: 797 LAANGREALAKLRGADPVDVVLMDIQMPVMDGLDACRAIRGLPPEVHFSDGRPIAGVPII 856

Query: 681 GCTADVFKDTRDKMLSAGADDIIAKPIAEHEL 712
             TAD     R++ LSAG ++ +AKP+    L
Sbjct: 857 AFTADALPGDRERFLSAGMNEHLAKPLNARRL 888



 Score = 31.2 bits (69), Expect = 3e-04
 Identities = 17/55 (30%), Positives = 26/55 (47%)

Query: 158 EREAEGLYFWSPVYVDPYTRVEMITVSTPYYRNGQFAGVATVDLSLESLIQFVAA 212
           E   E    W+ VY+DP  R  + +   P YR     GV  +D+++ + I  V A
Sbjct: 226 EHNPERKVVWTDVYLDPAGRGWIASAIAPAYRGTILEGVVGLDVTVGTFIDRVLA 280