Pairwise Alignments

Query, 736 a.a., histidine kinase from Vibrio cholerae E7946 ATCC 55056

Subject, 903 a.a., PAS domain S-box protein from Rhodopseudomonas palustris CGA009

 Score =  217 bits (552), Expect = 2e-60
 Identities = 130/372 (34%), Positives = 208/372 (55%), Gaps = 3/372 (0%)

Query: 343 LEAEKVKAQASTKAKSAFLATLSHEIRTPMNGVLGTAQILLKDE-LTSKQRQHLTSLYES 401
           L+A +  A+ ++ AK+ FLA +SHEIRTP+NG++G A ++L+DE L    R+ +  ++E+
Sbjct: 386 LKAARASAEQASAAKADFLANMSHEIRTPLNGIIGYADLVLEDETLAPDTRRQVMRIFEA 445

Query: 402 GEHMMSLLNEILDYSKIEQGKFELDHSAFPLKSIIGSIKSIYSSLCVEKGLKFQLNSEIT 461
            + +  ++++ILD+SKIE     L+     +  +I +  SI      EKGLK    ++ T
Sbjct: 446 SDSLRVIIDDILDFSKIEACGLTLESKPLYINELIANCASIIEPKADEKGLKLIATAQAT 505

Query: 462 DGRWYYGDKARLRQIIFNLLSNAVKFTEAGFVAIGLS-EESCDEENYLIIKVQDTGIGIA 520
                 GD  RLRQ++ NL++NAVKFT AG V + +S     D    L I V DTGIGI+
Sbjct: 506 PPV-LIGDAGRLRQVLLNLMNNAVKFTTAGSVELIVSCIGRVDHLVRLRISVADTGIGIS 564

Query: 521 QESLGRIFRPFEQAESHTTRRFGGTGLGLAIVKQIAELMNGTVLVQSEVGQGSCFKVRVK 580
            E+   +F+ F QA+   +R+FGGTGLGLAI ++I + M+G + + S+ G GS F   V+
Sbjct: 565 PEAQKGLFKRFSQADETISRKFGGTGLGLAISQRIVQAMHGELKIDSQPGVGSTFYFEVE 624

Query: 581 LAITEPVTEDVKPTKAKTYPGLRVLIVEDNRTNIMILEAFMRNKGFECHSVMDGVQAITA 640
           L + E +  +    +      +++L+V+D   N  + +  +   G +      G  AI  
Sbjct: 625 LPVAERLDIERLDAQVHCSRSVKILVVDDVEMNRDLCKTMLTRAGHDVDLADSGATAIAM 684

Query: 641 LQESSFDLVLMDNHMPLKDGIQATREIRQLPLPQAKILLFGCTADVFKDTRDKMLSAGAD 700
           +   ++DLV MD  M   DG++ATR IR L      + +   TA+V  +  ++  +AG D
Sbjct: 685 VASRTYDLVFMDVQMGEMDGLEATRRIRALGHAYRDVPIIALTANVLPEQVERYKAAGVD 744

Query: 701 DIIAKPIAEHEL 712
             + KPI   EL
Sbjct: 745 GHLGKPINRAEL 756