Pairwise Alignments

Query, 736 a.a., histidine kinase from Vibrio cholerae E7946 ATCC 55056

Subject, 1230 a.a., PAS/PAC sensor hybrid histidine kinase (RefSeq) from Shewanella loihica PV-4

 Score =  228 bits (580), Expect = 2e-63
 Identities = 129/356 (36%), Positives = 208/356 (58%), Gaps = 12/356 (3%)

Query: 321  IRYKSQDEIRHLIDTFNQKTIYLEAE------KVKAQASTKAKSAFLATLSHEIRTPMNG 374
            + + S ++ + ++ T    T +   E      K  A+++   KS FLA +SHEIRTPMN 
Sbjct: 680  VEFTSDNQPKRMVGTHKDITRHKSNEVALLEAKQDAESANLYKSEFLANMSHEIRTPMNA 739

Query: 375  VLGTAQILLKDELTSKQRQHLTSLYESGEHMMSLLNEILDYSKIEQGKFELDHSAFPLKS 434
            ++G  Q+  + +LT +Q  +L     S + ++ ++N+ILD+SKIE GK EL+  AFPL  
Sbjct: 740  IIGMLQLASRTQLTPQQADYLDKAGFSAQSLLRIINDILDFSKIEAGKLELERVAFPLDK 799

Query: 435  IIGSIKSIYSSLCVEKGLKFQLNSEITDGRWYYGDKARLRQIIFNLLSNAVKFTEAGFVA 494
            ++     + +    EKG++  L + +T G    GD  RL Q++ N+LSNAVKFT++G + 
Sbjct: 800  VLDHALDLNALKAQEKGVELLLYAPVTAGLILEGDPLRLGQVLINMLSNAVKFTQSGEIE 859

Query: 495  IGLSEESCDEENYLIIK--VQDTGIGIAQESLGRIFRPFEQAESHTTRRFGGTGLGLAIV 552
            +G  E+  + ++ + +K  V+DTGIGI++E    +F  F QA+  TTR++GGTGLGL+I 
Sbjct: 860  LG-CEDVGERDHRITLKFWVRDTGIGISKEQQESLFDAFAQADGSTTRKYGGTGLGLSIS 918

Query: 553  KQIAELMNGTVLVQSEVGQGSCFKVRVKLAITEPVTEDVKPTKAKTYPG-LRVLIVEDNR 611
            K +  +M GT+ VQSE+G GS F   +   I E    +VKP       G L+ L+V+DN 
Sbjct: 919  KHLVSMMGGTMQVQSELGVGSTFSFTISFEIAEEA--EVKPLIVPEVIGNLKTLVVDDNP 976

Query: 612  TNIMILEAFMRNKGFECHSVMDGVQAITALQESSFDLVLMDNHMPLKDGIQATREI 667
            T + I    MR+  F+  +  +G +A+  L+    DL+L+D  MP  DG++  + +
Sbjct: 977  TALQIYSTAMRDFHFDVDTASNGAEALYKLEHRPVDLLLLDWMMPEMDGVEVIKAL 1032



 Score = 67.0 bits (162), Expect = 6e-15
 Identities = 38/116 (32%), Positives = 63/116 (54%), Gaps = 1/116 (0%)

Query: 603  RVLIVEDNRTNIMILEAFMRNKGFECHSVMDGVQAITALQESSFDLVLMDNHMPLKDGIQ 662
            ++L+VEDN  N  +    +++ G+E     +G  A+  +    +D VLMD  MP+ DG+ 
Sbjct: 1111 QILLVEDNFINQQVATELLKSAGYEVDVAENGQVALDMVDAKQYDAVLMDIQMPVMDGLT 1170

Query: 663  ATREIRQLPLPQAKILLFGCTADVFKDTRDKMLSAGADDIIAKPIAEHELDMALEQ 718
            AT+E+R+    + ++ +   TA      R+K L+AG +  I KPI  +EL   L Q
Sbjct: 1171 ATKELRK-RYTKEELPVIAMTAHAMSGDREKSLAAGMNAHITKPIVLNELFDTLAQ 1225



 Score = 37.7 bits (86), Expect = 4e-06
 Identities = 16/40 (40%), Positives = 23/40 (57%)

Query: 167 WSPVYVDPYTRVEMITVSTPYYRNGQFAGVATVDLSLESL 206
           WSP YV+P  +  + TV  P Y   +F G   +D++L SL
Sbjct: 214 WSPAYVEPNGKGLLTTVGVPIYLEDEFIGSINLDMTLSSL 253