Pairwise Alignments

Query, 736 a.a., histidine kinase from Vibrio cholerae E7946 ATCC 55056

Subject, 1047 a.a., PAS domain S-box from Dechlorosoma suillum PS

 Score =  243 bits (621), Expect = 3e-68
 Identities = 150/413 (36%), Positives = 221/413 (53%), Gaps = 18/413 (4%)

Query: 334 DTFNQKTIYLEAEKVK--AQASTKAKSAFLATLSHEIRTPMNGVLGTAQILLKDELTSKQ 391
           D   +K   LE ++ K  A+++ +AK  FLA +SHEIRTPMNG+LG   + L   LT +Q
Sbjct: 511 DITERKHAELELQQAKEAAESANRAKGEFLANMSHEIRTPMNGILGMTDLALDSALTPEQ 570

Query: 392 RQHLTSLYESGEHMMSLLNEILDYSKIEQGKFELDHSAFPLKSIIGSIKSIYSSLCVEKG 451
           R +L  +  S + ++ ++N+ILD+SKIE GK EL+H  F L+ ++            ++ 
Sbjct: 571 RDYLEMVKSSADALLVIINDILDFSKIEAGKLELEHIHFHLRQLLRETLKPLELRARQRS 630

Query: 452 --LKFQLNSEITDGRWYYGDKARLRQIIFNLLSNAVKFTEAGFVAIGLSEESCDEENYLI 509
             L+ ++  E+ DG  Y GD  RLRQ++ NL+ NA+KFTE G VA+ +       +  L 
Sbjct: 631 LTLRCEVPEEVADG--YLGDPGRLRQVLINLVGNAIKFTEEGQVAVRVEA----RDGLLH 684

Query: 510 IKVQDTGIGIAQESLGRIFRPFEQAESHTTRRFGGTGLGLAIVKQIAELMNGTVLVQSEV 569
             V DTGIGI  +    IF  F QA+S  TRRFGGTGLGL I  ++  LM G + V+S+ 
Sbjct: 685 FAVSDTGIGIPADKQQLIFEAFSQADSSVTRRFGGTGLGLTICTRLVRLMGGHMWVESDP 744

Query: 570 GQGSCFKVRVKLAITEPVTEDVKPTKAK---TYPGLRVLIVEDNRTNIMILEAFMRNKGF 626
           GQGS F    +L       E  +    +     P LR+L+ EDN  N  ++   ++ +G 
Sbjct: 745 GQGSTFHFTARLEAVAGPAESGEADAGRGEVVLPPLRLLVAEDNPVNQKLVLTLLQKRGH 804

Query: 627 ECHSVMDGVQAITALQESSFDLVLMDNHMPLKDGIQATREIRQLPLPQA---KILLFGCT 683
                 +G QA+ AL    FDLVLMD  MP+  G++ATR IR     +     + +   T
Sbjct: 805 RVTLADNGQQALAALATDHFDLVLMDMQMPVMGGLEATRRIRAAEAARGDGQHLPIVAMT 864

Query: 684 ADVFKDTRDKMLSAGADDIIAKPIAEHELDMALEQ--HSERLYQFHREPSLPS 734
           A+     R+  L AG D  ++KP+   E   A+      ERL Q     ++P+
Sbjct: 865 ANAMAGDRELCLEAGMDGYVSKPLRRDEFFSAMADVLPPERLRQAGAAAAIPA 917