Pairwise Alignments

Query, 736 a.a., histidine kinase from Vibrio cholerae E7946 ATCC 55056

Subject, 858 a.a., PAS domain S-box from Dechlorosoma suillum PS

 Score =  241 bits (615), Expect = 1e-67
 Identities = 142/393 (36%), Positives = 220/393 (55%), Gaps = 12/393 (3%)

Query: 327 DEIRHLIDTFNQKTIYLEAE------KVKAQASTKAKSAFLATLSHEIRTPMNGVLGTAQ 380
           D  R ++ TF   T    AE      + KA+A+ +AKS FLA +SHEIRTP  G+LG   
Sbjct: 318 DLSRGVVWTFEDVTERKAAESELRHAREKAEAANRAKSEFLANMSHEIRTPFTGILGVLD 377

Query: 381 ILLKDELTSKQRQHLTSLYESGEHMMSLLNEILDYSKIEQGKFELDHSAFPLKSIIGSIK 440
           +LL   L  KQ +++   Y S + ++++LN+ILD SKIE GK  +      L  ++G + 
Sbjct: 378 LLLHTPLNEKQERYIRLAYGSTKQLLAILNDILDISKIEAGKLVIHPEEVDLVLLLGELT 437

Query: 441 SIYSSLCVEKGLKFQLNSEITDGRWYYGDKARLRQIIFNLLSNAVKFTEAGFVAIGLS-E 499
            + ++   +KGL+F+ + +       +GD  RLRQI+ NLL+NA+KFT +G+V + +   
Sbjct: 438 EVQAAAAAQKGLEFRYHIKGIIPPKIHGDPVRLRQIMANLLNNAIKFTNSGWVELDIECT 497

Query: 500 ESCDEENYLIIKVQDTGIGIAQESLGRIFRPFEQAESHTTRRFGGTGLGLAIVKQIAELM 559
                  +L ++V+D+GIG+  E    IF  F QA+S TTR FGGTGLGL I KQ+ ELM
Sbjct: 498 RIAPGRQHLRVEVRDSGIGVPPELQETIFDKFTQADSSTTRLFGGTGLGLTICKQLVELM 557

Query: 560 NGTVLVQSEVGQGSCFKVRVKLAITEPVTEDVKPTKAKT-----YPGLRVLIVEDNRTNI 614
           +G++ V S  G+GSCF   ++L  ++P    V    A +         R+L+V+D   N 
Sbjct: 558 HGSIGVSSNSGEGSCFWFDIELPESDPTVSPVPVLPAGSPITALPRDTRILLVDDTEANR 617

Query: 615 MILEAFMRNKGFECHSVMDGVQAITALQESSFDLVLMDNHMPLKDGIQATREIRQLPLPQ 674
            +L  ++     +     +G++A+T  +    D +LMD  M   DG +ATR+IR     +
Sbjct: 618 EVLAEYLAQAHCQVRQAANGLEAVTLAESWQPDAILMDCQMAGMDGYEATRQIRIQEGQR 677

Query: 675 AKILLFGCTADVFKDTRDKMLSAGADDIIAKPI 707
            +  +   TA V +  R+K L+AG DD + KP+
Sbjct: 678 RRTPIIALTAFVMRGDREKCLAAGMDDYLPKPV 710



 Score = 58.2 bits (139), Expect = 2e-12
 Identities = 45/129 (34%), Positives = 64/129 (49%), Gaps = 14/129 (10%)

Query: 590 DVKPTKAKTYPGLRVLIVEDN----RTNIMILEAFMRNKGFECHSVMDGVQAITALQESS 645
           +  P +   + G R+L+V+DN      +  +LEA     G +  S   G +A+    E+ 
Sbjct: 727 ETNPARTPRFSG-RILLVDDNPEIREASTCLLEAL----GCQVQSASSGEEALQLGPEAD 781

Query: 646 FDLVLMDNHMPLKDGIQATR--EIRQLPLPQAKILLFGCTADVFKDTRDKMLSAGADDII 703
           FDLVLMD  MP  DG   TR    R+   P A I L   TA    ++R +   AG +D +
Sbjct: 782 FDLVLMDCRMPGLDGCATTRAWRARERGTPTAIIAL---TAGDPDESRAQCREAGMNDFL 838

Query: 704 AKPIAEHEL 712
           AKP +E EL
Sbjct: 839 AKPFSEQEL 847