Pairwise Alignments

Query, 736 a.a., histidine kinase from Vibrio cholerae E7946 ATCC 55056

Subject, 839 a.a., PAS domain S-box from Dechlorosoma suillum PS

 Score =  229 bits (584), Expect = 4e-64
 Identities = 146/415 (35%), Positives = 222/415 (53%), Gaps = 21/415 (5%)

Query: 306 IAKKVSESREGEIIDIRYKSQDEIRHLIDTFNQKTIYLEAEKVKAQASTKAKSAFLATLS 365
           +A+ ++E +  E     Y       HL +   ++T  L   +  A A+  AKSAFLA +S
Sbjct: 412 VARDITERKRLEAEVSNYS-----HHLEELVAERTEELARARDAANAANVAKSAFLANMS 466

Query: 366 HEIRTPMNGVLGTAQILLKDELTSKQRQHLTSLYESGEHMMSLLNEILDYSKIEQGKFEL 425
           HEIRTPMN ++G   IL K E + +Q+  L  + ++  H++S++N+ILD SKIE  +  L
Sbjct: 467 HEIRTPMNAIIGLTHILKKGEPSPQQQDRLDKIDDAASHLLSIINDILDLSKIEAERLVL 526

Query: 426 DHSAFPLKSIIGSIKSIYSSLCVEKGLKFQLNSEITD-GRWYYGDKARLRQIIFNLLSNA 484
           +     L  I+  I S+ +    +K +   L SE+     +  GD  RL Q I N  SNA
Sbjct: 527 EEQPVELGRIVSHIFSMLAEGARKKDI--VLKSEVDPLPPYLLGDPTRLTQAILNYASNA 584

Query: 485 VKFTEAGFVAIGLSE-ESCDEENYLIIKVQDTGIGIAQESLGRIFRPFEQAESHTTRRFG 543
           VKFTE G V + +   E    + +L  +V+DTGIGIA E    +F PF+QA+  T+RRFG
Sbjct: 585 VKFTEWGSVTLRIKVLELTPADVFLRFEVEDTGIGIAPEVQPLLFAPFQQADGSTSRRFG 644

Query: 544 GTGLGLAIVKQIAELMNGTVLVQSEVGQGSCFKVRVKLAITE---------PVTEDVKPT 594
           GTGLGL I +++A++M G   V S +G GS F    +L + E         P  +  +  
Sbjct: 645 GTGLGLVITRRLAQIMGGDAGVDSRLGFGSTFWFSARLKLGEARAALPEDGPRPDSAEGE 704

Query: 595 KAKTYPGLRVLIVEDNRTNIMILEAFMRNKGFECHSVMDGVQAITALQESS--FDLVLMD 652
             + Y G  +L+ ED+  N  +    +   G       DG +A+  L+  +  + LVLMD
Sbjct: 705 LLQHYRGTPILLAEDDSINQEVARELLEYAGLRVDIAADGNEAVACLERGTTPYALVLMD 764

Query: 653 NHMPLKDGIQATREIRQLPLPQAKILLFGCTADVFKDTRDKMLSAGADDIIAKPI 707
             MP  DG++ATR IR+LP     + +   TA+ F + R++ L AG +D + KP+
Sbjct: 765 MQMPGMDGLEATRHIRRLP-GMESLPIISMTANAFGEDRERCLEAGMNDFVPKPV 818