Pairwise Alignments

Query, 736 a.a., histidine kinase from Vibrio cholerae E7946 ATCC 55056

Subject, 1281 a.a., PAS domain S-box from Dechlorosoma suillum PS

 Score =  254 bits (650), Expect = 1e-71
 Identities = 150/413 (36%), Positives = 234/413 (56%), Gaps = 18/413 (4%)

Query: 319  IDIRYKSQDEIR----HLIDTFNQKTIYLEAEKVKAQASTKAKSAFLATLSHEIRTPMNG 374
            I  R + + E+     HL +  + +T+ L   + +A+++++AKSAFLA +SHEIRTPMN 
Sbjct: 779  ITFRLRLEQELEQHRHHLEELVHARTMELAEARDEAESASRAKSAFLANMSHEIRTPMNA 838

Query: 375  VLGTAQILLKDELTSKQRQHLTSLYESGEHMMSLLNEILDYSKIEQGKFELDHSAFPLKS 434
            +LG + +L ++   ++ R+ +  ++ +  H+++++N+ILD SKIE  K  LD   F L  
Sbjct: 839  ILGLSHLLGREVGDARARERVDKIHGAATHLLNIINDILDLSKIEAEKLHLDMQDFLLAR 898

Query: 435  IIGSIKSIYSSLCVEKGLKFQLNSEITDGRWYYGDKARLRQIIFNLLSNAVKFTEAGFVA 494
            +  + +++       KGL+ + + +        GD   L+QI+ N LSNAVKF++ G + 
Sbjct: 899  LFDNAENLLRPQLEAKGLRLERHLDPALPPVLRGDAMHLQQILVNFLSNAVKFSDQGHIT 958

Query: 495  IG---LSEESCDEENYLIIKVQDTGIGIAQESLGRIFRPFEQAESHTTRRFGGTGLGLAI 551
            +G   LS      E  L ++V D GIGIA E    +F+ FEQA++ TTR++GGTGLGLAI
Sbjct: 959  LGARLLSRSQSQVE--LRLEVADQGIGIAPEQQAALFQAFEQADNSTTRKYGGTGLGLAI 1016

Query: 552  VKQIAELMNGTVLVQSEVGQGSCFKVRVKLAITEPVTEDVKPTKAKTYP--------GLR 603
             K++  LM G + V S+ GQGS F + ++L + +        T  +  P        G R
Sbjct: 1017 SKRLIRLMGGDIGVDSKPGQGSVFWISLRLEVADTAAGTTAATAEQELPARLRARHGGCR 1076

Query: 604  VLIVEDNRTNIMILEAFMRNKGFECHSVMDGVQAITALQESSFDLVLMDNHMPLKDGIQA 663
            +L+ EDN  N  + +  + + G       DG QA++  Q   FDLVLMD +MP  DG+QA
Sbjct: 1077 ILLAEDNALNQEVAQDLLHDAGLAVSVAEDGHQAVSLAQSGGFDLVLMDVNMPHLDGLQA 1136

Query: 664  TREIRQLPLPQAKILLFGCTADVFKDTRDKMLSAGADDIIAKPIAEHELDMAL 716
            TR IR+LP   A + +   TA  F + R + L AG +D +AKP+    L  AL
Sbjct: 1137 TRAIRELP-GCADLPILAMTAGAFAEDRARCLEAGMNDFVAKPVVPEVLYQAL 1188