Pairwise Alignments

Query, 736 a.a., histidine kinase from Vibrio cholerae E7946 ATCC 55056

Subject, 1306 a.a., PAS domain S-box from Dechlorosoma suillum PS

 Score =  211 bits (538), Expect = 1e-58
 Identities = 130/390 (33%), Positives = 213/390 (54%), Gaps = 12/390 (3%)

Query: 332 LIDTFNQKTIYLEAEKVKAQA--STKAKSAFLATLSHEIRTPMNGVLGTAQILLKDELTS 389
           ++D   +K +  E  + +A A  +T+AKS FLA +SHEIRTPMN ++G A + +K ELT 
Sbjct: 552 VVDISERKLMEEELRRARATAEEATEAKSLFLANMSHEIRTPMNAIIGMAHLAMKTELTP 611

Query: 390 KQRQHLTSLYESGEHMMSLLNEILDYSKIEQGKFELDHSAFPLKSIIGSIKSIYSSLCVE 449
           KQR ++  ++ +   ++ ++N+ILD+SKIE GK  L++  F L+ ++ ++  +      E
Sbjct: 612 KQRDYVGKIHNAAISLLGIINDILDFSKIEAGKLSLEYVPFSLEDVLDNVSGLLGLKANE 671

Query: 450 KGLKFQLNSEITDGRWYYGDKARLRQIIFNLLSNAVKFTEAGFVAIGLSE-ESCDEENYL 508
           KGL+   N          GD  RL QI+ NL+SNA+KFTE G + +     +   +   L
Sbjct: 672 KGLELLFNVNAGTPAGLVGDPLRLNQILTNLVSNAIKFTERGQITLTTRPVDQAGDRVKL 731

Query: 509 IIKVQDTGIGIAQESLGRIFRPFEQAESHTTRRFGGTGLGLAIVKQIAELMNGTVLVQSE 568
              ++D GIG+++E L  +F+ F QA+  TTR++GGTGLGL+I +++ E+M GT+   S 
Sbjct: 732 QFWIEDMGIGMSREQLLHLFQAFTQADGSTTRKYGGTGLGLSISRRLVEMMGGTIWADST 791

Query: 569 VGQGSCFKVRVKLAITEPVTEDVKPTKAKTYPGLRVLIVEDNRTNIMILEAFMRNKGFEC 628
           +G+GS F         E +      T   +  GLRVL+ +DN     IL   +R+     
Sbjct: 792 LGEGSTFCFTAWFGRAEELAR--PRTLPASLAGLRVLVADDNGAAREILGEALRHLDLRP 849

Query: 629 HSVMDGVQAITALQE-----SSFDLVLMDNHMPLKDGIQATREIRQLPLPQAK-ILLFGC 682
             V  G +A+  L E       + ++ +D  MP  DG+    +++Q  LPQA+   +   
Sbjct: 850 DLVASGAEALAQLTEMQGGADPYRVLFLDWQMPDLDGVSTLHKLQQ-ALPQAQWPRVVMV 908

Query: 683 TADVFKDTRDKMLSAGADDIIAKPIAEHEL 712
           TA   ++ R +  + G   I+ KP++   L
Sbjct: 909 TAYDQEELRRQTENLGICGILVKPVSASTL 938



 Score = 67.8 bits (164), Expect = 3e-15
 Identities = 41/110 (37%), Positives = 60/110 (54%), Gaps = 4/110 (3%)

Query: 601  GLRVLIVEDNRTNIMILEAFMRNKGFECHSVMDGVQAITALQES---SFDLVLMDNHMPL 657
            G+R+L+ EDN  N  I    +++ G +     DG+QA+  L+ S   SFDLVLMD  MP 
Sbjct: 967  GMRILLAEDNEINQQIAVELLQSMGAQVTVAGDGLQAVELLERSPDDSFDLVLMDLQMPH 1026

Query: 658  KDGIQATREIRQLPLPQAKILLFGCTADVFKDTRDKMLSAGADDIIAKPI 707
             DG  AT  +R      A + +   TA    + R++ L+ G +D +AKPI
Sbjct: 1027 LDGYDATERLR-CQQRFAHLPILAMTAHAMPEERERCLAIGMNDHLAKPI 1075