Pairwise Alignments

Query, 736 a.a., histidine kinase from Vibrio cholerae E7946 ATCC 55056

Subject, 1765 a.a., sensory box histidine kinase/response regulator (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  239 bits (609), Expect = 1e-66
 Identities = 135/398 (33%), Positives = 231/398 (58%), Gaps = 9/398 (2%)

Query: 318  IIDIRYKSQDEIRHLIDTFNQKTIYLE--AEKVKAQASTKAKSAFLATLSHEIRTPMNGV 375
            ++D + + +  +  ++D    K +  E    K +A A++KAK  FLA +SHEIRTPMN +
Sbjct: 999  LLDSQNQFESAVVSMVDMTELKLLSDELLVAKDEADAASKAKGDFLANMSHEIRTPMNAI 1058

Query: 376  LGTAQILLKDELTSKQRQHLTSLYESGEHMMSLLNEILDYSKIEQGKFELDHSAFPLKSI 435
            +G +Q+ L+ +L  KQ+ +L  +  + + ++S++N+ILD+SKIE GK ++++ +F L ++
Sbjct: 1059 IGMSQLCLQTQLDKKQKNYLEKIERASQSLLSIINDILDFSKIEAGKLDIENVSFQLDTM 1118

Query: 436  IGSIKSIYSSLCVEKGLKFQLNSEITDGRWYYGDKARLRQIIFNLLSNAVKFTEAGFVAI 495
            +  +  ++S    +K ++          R   GD  RL Q++ NL++NA+KFTE G V +
Sbjct: 1119 LEDLSDMFSERAAQKQIELLFAVAPNVPRHLLGDPLRLGQVLINLMNNAIKFTERGEVLL 1178

Query: 496  GLS-EESCDEENYLIIKVQDTGIGIAQESLGRIFRPFEQAESHTTRRFGGTGLGLAIVKQ 554
             LS  E  +++  L   V+D+GIG+ QE   ++F+ F QA++ TTR++GGTGLGLAI KQ
Sbjct: 1179 SLSLVEQQNDDVVLRFSVRDSGIGLTQEQQSKLFKSFTQADTSTTRKYGGTGLGLAISKQ 1238

Query: 555  IAELMNGTVLVQSEVGQGSCFKVRVKLAITEPVTEDVKPTKAKTYPGLRVLIVEDNRTNI 614
            + ELM G++ V+S++G GS F   VKL I    +   K    +   G+ +L+ +DN T  
Sbjct: 1239 LVELMGGSIGVESQLGHGSTFFFTVKLCI----SSGQKLFVGQELDGMSILVADDNATAR 1294

Query: 615  MILEAFMRNKGFECHSVMDGVQAITALQESSFDLVLMDNHMPLKDGIQATREIRQLPLPQ 674
             I+   + + GF   +V  G +AI    +  + + L+D  MP  DGI+  ++I+Q     
Sbjct: 1295 DIMRTTLESMGFNVDTVRSGDEAIMRCSQQEYAVALIDWKMPNLDGIETAKQIKQQTKNA 1354

Query: 675  AKILLFGCTADVFKDTRDKMLSAGADDIIAKPIAEHEL 712
             +IL+    A+  +D   ++   G    I+KPI+   L
Sbjct: 1355 PRILMVSAHAN--QDFLTQIEQLGLAGYISKPISASRL 1390



 Score = 79.3 bits (194), Expect = 2e-18
 Identities = 79/280 (28%), Positives = 120/280 (42%), Gaps = 34/280 (12%)

Query: 446  LCVEKGLKFQLNSEITDGRWYY--GDKARLRQIIFNLLSNA---VKFTEAGFVAIGLSEE 500
            LC+  G K  +  E+ DG       D A  R I+   L +    V    +G  AI     
Sbjct: 1265 LCISSGQKLFVGQEL-DGMSILVADDNATARDIMRTTLESMGFNVDTVRSGDEAI----M 1319

Query: 501  SCDEENYLIIKVQ---------DTGIGIAQESLG--RIFRPFEQAESHTTRRFGGTGLGL 549
             C ++ Y +  +          +T   I Q++    RI      A      +    GL  
Sbjct: 1320 RCSQQEYAVALIDWKMPNLDGIETAKQIKQQTKNAPRILMVSAHANQDFLTQIEQLGLAG 1379

Query: 550  AIVKQIA--ELMNGTVLVQSEVGQGSCFKVRVKLAITEPVTEDVKPTKAKTYPGLRVLIV 607
             I K I+   L++G   + + +G+     VR          +++ P       G R+L+V
Sbjct: 1380 YISKPISASRLLDG---IMNALGRSGILPVRRH-------QDNIAPELLLPLKGKRILLV 1429

Query: 608  EDNRTNIMILEAFMRNKGFECHSVMDGVQAITALQESSFDLVLMDNHMPLKDGIQATREI 667
            EDN  N+ +   F+   G       +G  A+  L + SFDLVLMD  MP+ DG QAT+ I
Sbjct: 1430 EDNEMNLEVATEFLEQVGIILSIATNGQIALDKLAQQSFDLVLMDCQMPVMDGYQATKAI 1489

Query: 668  RQLPLPQAKILLFGCTADVFKDTRDKMLSAGADDIIAKPI 707
            RQ P   A++ +   TA+     ++  L AG +D IAKPI
Sbjct: 1490 RQRP-ELAQLPVIAMTANAMAGDKEMCLRAGMNDHIAKPI 1528



 Score = 40.0 bits (92), Expect = 1e-06
 Identities = 49/209 (23%), Positives = 90/209 (43%), Gaps = 20/209 (9%)

Query: 8   SLKKKSILALTIYLAFFLAIVGTLSYWGLEVPFRKELKNNLALRAELLATQIREPLNNSI 67
           + + K +  + + L   +A V  ++ W   +   K L  NLA  +   A++++  L ++ 
Sbjct: 8   TFRSKILSHIALPLILIMATVYGITSWFNYLSIEKRLYENLAQESSHSASRLQFLLEHAQ 67

Query: 68  GVLQSLTSIGKSAADKEE---QERMLRSLFSVV--GGVIISGGLWPEPNLSATDPSLRYD 122
              Q L+      ADK++    E++   L + +          +  +PN   T P+ +  
Sbjct: 68  ANTQGLSDFIGLLADKDDINNPEKLKTVLTNRIQRNPDFFGSAIAFKPN---TFPNKKLF 124

Query: 123 SLFFNKATDGQVDQLSSWNNPKAGGYDRES----WYLAAEREAEGLYFWSPVYVDPYT-R 177
           S +  ++  G      ++ +  A GYD       W+  A  +  G  +WS  Y D     
Sbjct: 125 SPYVYRSGSG-----FNYLDIGADGYDYTDGNWDWWSKAINQVGG--YWSKAYFDEGAGN 177

Query: 178 VEMITVSTPYYRNGQFAGVATVDLSLESL 206
           V MIT + P+     + GV TVDL+L+ L
Sbjct: 178 VLMITYAVPFGVQPDYFGVTTVDLALDRL 206