Pairwise Alignments

Query, 736 a.a., histidine kinase from Vibrio cholerae E7946 ATCC 55056

Subject, 1188 a.a., sensory box histidine kinase/response regulator (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  221 bits (563), Expect = 2e-61
 Identities = 127/322 (39%), Positives = 192/322 (59%), Gaps = 9/322 (2%)

Query: 343 LEAEKVKAQASTKAKSAFLATLSHEIRTPMNGVLGTAQILLKDELTSKQRQHLTSLYESG 402
           LEA K  A+ +   KS FLA +SHEIRTPMN ++G  Q+  +  LT++Q+ +L     S 
Sbjct: 661 LEA-KQDAELANLYKSEFLANMSHEIRTPMNAIIGMLQLAQRTSLTAQQKDYLEKAGFSA 719

Query: 403 EHMMSLLNEILDYSKIEQGKFELDHSAFPLKSIIGSIKSIYSSLCVEKGLKFQLNSEITD 462
           + ++ ++N+ILD+SKIE GK EL+   FPL  ++     + +    E+G++  L + +T 
Sbjct: 720 QSLLRIINDILDFSKIEAGKLELERVPFPLDKVLDHALDLNALKAQEQGVELLLYAPVTA 779

Query: 463 GRWYYGDKARLRQIIFNLLSNAVKFTEAGFVAIGLSEESCDEENYLIIK--VQDTGIGIA 520
           G    GD  RL Q++ NLLSNAVKFT++G + +G  E+  + ++ + +K  V+DTGIGI+
Sbjct: 780 GLILKGDPLRLGQVLINLLSNAVKFTQSGEIELG-CEDVGERDHRITLKFWVRDTGIGIS 838

Query: 521 QESLGRIFRPFEQAESHTTRRFGGTGLGLAIVKQIAELMNGTVLVQSEVGQGSCFKVRVK 580
           ++   ++F  F QA+  TTR++GGTGLGL+I K +  +M G + VQSE+G GS F   + 
Sbjct: 839 KDQQEKLFDAFAQADGSTTRKYGGTGLGLSISKHLVSMMGGKMQVQSELGVGSTFSFTIS 898

Query: 581 LAITEPVTED--VKPTKAKTYPGLRVLIVEDNRTNIMILEAFMRNKGFECHSVMDGVQAI 638
             I E    +  V P K      LR L+V+DN T + I  A MR+  FE  +   G +A+
Sbjct: 899 FEIAEEAKIEPLVVPEKLN---NLRTLVVDDNPTALQIYSALMRDFHFEVDTAASGAEAL 955

Query: 639 TALQESSFDLVLMDNHMPLKDG 660
             L     DL+L+D  MP  DG
Sbjct: 956 YKLSRDPIDLLLLDWMMPEMDG 977



 Score = 62.4 bits (150), Expect = 1e-13
 Identities = 45/141 (31%), Positives = 70/141 (49%), Gaps = 6/141 (4%)

Query: 573  SCFKVRVKLAITEPVTEDVKPTKAKTYPGLRVLIVEDNRTNIMILEAFMRNKGFECHSVM 632
            + F    +L + +P+ E     +   + GL VL+VEDN  N  +    +++ G+E     
Sbjct: 1038 AAFADEPRLNVVQPIAEVA--VEEGEHTGL-VLLVEDNFINQQVATELLKSAGYEVVVAG 1094

Query: 633  DGVQAITALQESSFDLVLMDNHMPLKDGIQATREIRQLPLPQAKIL-LFGCTADVFKDTR 691
            +G  A+  +    FD VLMD  MP+ DG+ A R +R+     A +L +   TA      R
Sbjct: 1095 NGQIALDIVDSRPFDAVLMDIQMPVMDGLTAARALRE--RYSADVLPIIAMTAHAMSGDR 1152

Query: 692  DKMLSAGADDIIAKPIAEHEL 712
            +K L+AG +  I KPI   EL
Sbjct: 1153 EKSLAAGMNAHITKPIVLTEL 1173



 Score = 34.3 bits (77), Expect = 4e-05
 Identities = 15/41 (36%), Positives = 23/41 (56%)

Query: 166 FWSPVYVDPYTRVEMITVSTPYYRNGQFAGVATVDLSLESL 206
           FWS  YVD   +  + T+  P Y + +F G   +D++L SL
Sbjct: 165 FWSEAYVDSTGKGLLTTLGVPVYLDDEFMGSINLDMTLASL 205