Pairwise Alignments

Query, 736 a.a., histidine kinase from Vibrio cholerae E7946 ATCC 55056

Subject, 1626 a.a., putative PAS/PAC sensor protein (RefSeq) from Shewanella sp. ANA-3

 Score =  213 bits (543), Expect = 5e-59
 Identities = 137/373 (36%), Positives = 207/373 (55%), Gaps = 20/373 (5%)

Query: 304  VLIAKKVSESREGEIIDIRYKSQDEIRHLIDTFNQKTIYLEAEKVKAQASTK--AKSAFL 361
            V  A K+   R+G +I +       I   ID   Q+ +       K +A T   AKSAFL
Sbjct: 852  VQAAAKIERDRQGHVIRV-------IGINIDITAQRQLEKTLRNAKQEADTANAAKSAFL 904

Query: 362  ATLSHEIRTPMNGVLGTAQILLKDELTSKQRQHLTSLYESGEHMMSLLNEILDYSKIEQG 421
            A +SHEIRTPMN VLG  Q++    L+ +Q+ ++T    + + ++ LLN+ILD+SKI+ G
Sbjct: 905  ANMSHEIRTPMNAVLGMLQLMQYTALSVQQQGYVTKAQTAAKSLLGLLNDILDFSKIDAG 964

Query: 422  KFELDHSAFPLKSIIGSIKSIYSSLCVEKGLKFQLNSEITDGRWYYGDKARLRQIIFNLL 481
            K +LD     ++ ++  +  + S+      ++   + +     W   D+ RL+QI+ NL 
Sbjct: 965  KLKLDLHPCSIELLMRDLAVVLSANHGNSDVEVMFDLDSALPAWLLADQLRLQQILINLA 1024

Query: 482  SNAVKFTEAGFVAIGLSEESCDEENYLI-IKVQDTGIGIAQESLGRIFRPFEQAESHTTR 540
             NA+KFT  G V +GL     + E+  +   + D+GIGI++E + RIF  FEQAES T+R
Sbjct: 1025 GNALKFTPHGQVIVGLECLRHEAESVTVQFSIVDSGIGISEEQIERIFTGFEQAESSTSR 1084

Query: 541  RFGGTGLGLAIVKQIAELMNGTVLVQSEVGQGSCFKVRVKLAITEPVTEDVKPTKAKTYP 600
            RFGGTGLGLAI K++ ELM G + V S+VG GS    R    +T PV E V+        
Sbjct: 1085 RFGGTGLGLAISKRLVELMGGQLQVTSKVGVGS----RFWFDLTFPVME-VEANPRADLS 1139

Query: 601  GLRVLIVEDNRTNIMILEAFMRNKGFECHSVMDGVQAITALQESS-----FDLVLMDNHM 655
            G R+L+V+DN+    IL   + + G    +   G QAI  +++++     FD+VLMD  M
Sbjct: 1140 GYRILVVDDNQITTEILSKILSDYGCVVETASGGYQAIEKVKQATANAQQFDVVLMDWRM 1199

Query: 656  PLKDGIQATREIR 668
            P  DG+Q    ++
Sbjct: 1200 PDIDGLQTAEMLK 1212



 Score = 62.0 bits (149), Expect = 2e-13
 Identities = 40/129 (31%), Positives = 66/129 (51%), Gaps = 15/129 (11%)

Query: 592  KPTKAKTYPGLRVLIVEDNRTNIMILEAFMRNKGFECHSVMDGVQAITALQESS--FDLV 649
            KP   +   GL +L+VEDN+ N  +++  +  +G        G++ +T + +S   FD V
Sbjct: 1276 KPRSQRLLAGLTLLVVEDNQLNREVIDELLTYEGATVVLAEGGIEGVTQVLDSGDMFDAV 1335

Query: 650  LMDNHMPLKDGIQATREIR------QLPLPQAKILLFGCTADVFKDTRDKMLSAGADDII 703
            +MD  MP  DG++ATR IR      QLP       +   TA+  +  + + L AG +  +
Sbjct: 1336 IMDMQMPDIDGLEATRRIRADGRFDQLP-------ILAMTANASQADKQECLEAGMNAHV 1388

Query: 704  AKPIAEHEL 712
            +KPI   +L
Sbjct: 1389 SKPIDMQQL 1397