Pairwise Alignments

Query, 621 a.a., PTS fructose transporter subunit IIA from Vibrio cholerae E7946 ATCC 55056

Subject, 575 a.a., PTS fructose IIC component (NCBI) from Rhodospirillum rubrum S1H

 Score =  244 bits (624), Expect = 6e-69
 Identities = 146/340 (42%), Positives = 204/340 (60%), Gaps = 11/340 (3%)

Query: 172 AQRLARVKEHLLFGTSHMMPFIVAGGVLLSLSVMMSGHGAVPE--EGVLA-DIAQMGI-A 227
           AQR    K HL+ G S M+PF+VAGG+L++L+  + G  A  E  +G LA D+ Q+G  +
Sbjct: 235 AQRTGAYK-HLMTGVSFMLPFVVAGGLLIALAFALGGINAFDEANKGTLAYDLFQIGAKS 293

Query: 228 GLTLFTVVLGGYIAYSMADKPGLAPGMIGTWIAINQYQTGFIGAIIVGFFAGFVVRQLKR 287
              L    L GYIA+S+AD+PG+APGMIG  +A N    GF+G II GF AG+V     R
Sbjct: 294 AFVLMVPALAGYIAFSIADRPGIAPGMIGGLVAAN-LGAGFLGGIIAGFIAGYVTAWFNR 352

Query: 288 -IALPDSMSSLGSIFIYPLVGTFVTCGAVMWLIGAPIASSMLWLNQFLASMADSGKVVLG 346
            I L  ++  L  + I P++GT VT   +++++G P+A  + WL + L  M  S  +VLG
Sbjct: 353 TIRLHRNLEGLKPVLILPVLGTVVTGLLMIYVVGTPVAGLLSWLTEALRGMQGSSAIVLG 412

Query: 347 AVLGAMTAFDMGGPINKVATLFAQTQVNTQPWL-MGGVGIAICTPPLGMALATLLSPSKF 405
            ++GAM AFDMGGP+NK A  F+   + ++ +  M    +A  TP LG+ALA+ L  S+F
Sbjct: 413 LLIGAMMAFDMGGPVNKAAYAFSTGLLASEVYTPMAAAMVAGMTPALGVALASRLFRSRF 472

Query: 406 KRDEREAGKAAGIMGMIGISEGAIPFAAADPARVLPAIIAGGIVGNVIGFLFQVLNHAPW 465
              EREAG AA ++G+  I+EGAIPFAA+DP RV+PA++AG      I          P 
Sbjct: 473 TASEREAGGAAAVLGLAFITEGAIPFAASDPFRVIPALMAGSAAAGAISMTVGAELKVPH 532

Query: 466 GGWIVLPV---VDGKLGYILGTIAGALATALIAIALKKTV 502
           GG  VLP+   V   LGYI+  + G L TAL+    K+ V
Sbjct: 533 GGIFVLPIPNAVTHLLGYIVALVVGTLITALVLRITKRPV 572



 Score = 68.6 bits (166), Expect = 7e-16
 Identities = 41/110 (37%), Positives = 67/110 (60%), Gaps = 2/110 (1%)

Query: 509 QGQSLAFS-SVIGEGQADILAVTSCPSGVAHTFLAAKSLEKAACLAGVKIKVETQGANGI 567
           +G  LA S +   +G   I+A+TSCP+G+AHTF+AA+ + +AA   G + +VETQG+ G 
Sbjct: 98  EGAELAGSVAATDDGVRRIVAITSCPTGIAHTFMAAEGITQAAKALGYQARVETQGSVGS 157

Query: 568 INRITAKDVQRAKLVIFAHDVAIKEPERFKHIKVIDVTTKDAILNAAALV 617
            + ++  ++ +A +V+ A D  I +  RF   +V    TK AI +  AL+
Sbjct: 158 RDTLSDDEIAQADIVLIAADTQI-DLARFDGKRVFLSGTKPAIADGKALI 206



 Score = 33.9 bits (76), Expect = 2e-05
 Identities = 24/103 (23%), Positives = 49/103 (47%), Gaps = 12/103 (11%)

Query: 515 FSSVIGEGQADILAVTSCPSGVAHTFLAAKSLEKAACLAGVKIKVETQGANGIINRITAK 574
           F +V+G G+    A+           L A++L +AA  AG +I +E +   G++N ++  
Sbjct: 4   FIAVVGGGERSTQAL-----------LVAEALRRAASGAGHRIDIEVRSDQGVVNALSDD 52

Query: 575 DVQRAKLVIFAHDVAIKEPERFKHIKVIDVTTKDAILNAAALV 617
            + RA+ VI        +  RF  +  ++ T +  + +  A++
Sbjct: 53  AIVRARAVILI-GTGDLDVGRFPGLPKLETTIEAVLADVGAVL 94