Pairwise Alignments

Query, 587 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 621 a.a., Transcriptional activator of acetoin dehydrogenase operon AcoR from Pseudomonas fluorescens FW300-N2E2

 Score =  293 bits (749), Expect = 2e-83
 Identities = 208/605 (34%), Positives = 319/605 (52%), Gaps = 35/605 (5%)

Query: 3   QLQQLSHVNWLVNSWQRS-EQAGLTQQSRAQDIRLSDNKLKERRQELAGLIDTVSRFALP 61
           QL QL   + +++SW+RS EQ  L   S      LS + LK+ R+     ++  S     
Sbjct: 22  QLPQLPVPDLILDSWRRSLEQHHLDPGSLQGPRILSQDVLKQCRERSELFLNIASEEVAR 81

Query: 62  LFYQLFAHSDSRLILTDQHGVIIGSWGQARFREKLSQIALSSGACWQEPIKGTNAIGTAL 121
           L  ++   +D  ++LTD  G  I    +   R    +  L  G CW E  +GT  +   L
Sbjct: 82  LHGRV-RDADYCVLLTDAQGQTIDYRVETTIRNDCRKAGLYLGTCWSEGEEGTCGVAAVL 140

Query: 122 IEQKPISVIGEQHFIQHHHFISCSASPIFDYTGQLIGVLDITSEQQKHTLSTQVVVQNMV 181
             + P++V    HF      ++CSA+P+FD  G+L+GVLD+++ +      +Q +++ MV
Sbjct: 141 TAKAPVTVHKRDHFRAAFIGLTCSAAPVFDPQGELLGVLDVSAVRSPDDRRSQHLIRQMV 200

Query: 182 ----QLVENQLLNQIPHGHVRIDLACEPSLLSSGWQGVIIADESGQILAHNQVAGQLLAQ 237
               + +E         G+  +        + S    +   D+ G + A N  A Q L Q
Sbjct: 201 VQSAREIEQAFFMSSAQGYWVLRAHRNAGYVDSQPDFLFAWDDDGCLQALNPAARQYLLQ 260

Query: 238 --GRV---IGQSVEQVL---PRPQT-----HASFIYTTTPLHSKQHRTR-ALTPASDLHF 283
             G++   IGQ  +Q L    R ++     HA     + P      R+R A+TP      
Sbjct: 261 HYGQLPQHIGQVFDQQLLHRARDESLCSLDHAMHGRLSAPRQRASSRSRVAVTPLEI--- 317

Query: 284 GDAEVERCWQQANRVIDKDIRLLILGQTGVGKNEFVKALHKNSQRKNGPLVAVNCGALAK 343
            D  +    + A RV D+++ +LI G+TG GK  F + LH+ SQR++ P VA+NC A+ +
Sbjct: 318 -DPRLADSLRLAVRVKDRNLPVLIQGETGSGKEVFARQLHQASQRRDRPFVALNCAAIPE 376

Query: 344 ELVEAELFGYVAGAFTGASHKGYQGKVRLADKGILFLDEIADLPLDAQSRLLHVLQDKTV 403
            L+E+ELFGYVAGAFTGAS KG QG ++ AD G LFLDEI D+PL  Q+RLL VL +  V
Sbjct: 377 SLIESELFGYVAGAFTGASAKGMQGLLQQADGGTLFLDEIGDMPLALQTRLLRVLAEGEV 436

Query: 404 LPVGSNHATKVDIQIIAATHKNLEQLVTQGLFRQDLYYRLSDLVVELPSFQQRQDRQALI 463
            P+G++    VDIQ+I ATH++LE LV  G FR+DLY+RL     +LP  ++R DR ALI
Sbjct: 437 APLGASRRKAVDIQVICATHRDLETLVAAGEFREDLYFRLGGARFQLPPLRERSDRLALI 496

Query: 464 HHIHRRYS---DAGQQICGDLMQRLLAYHWPGNLRELDSLIKVASLMAEGEGVLTFNHLP 520
           + I    S    A  Q+ G  ++ LL YHWPGN+R+L  +++ A  + E   V+  +HLP
Sbjct: 497 NRILAEESALCGATVQLSGAALECLLGYHWPGNVRQLRHVLRYACAVCEA-SVVQLSHLP 555

Query: 521 THLAQKLSHAAPTATEDDQQKDIKSTVEASLLKTYQATQGNISQTSRLLGLSRNTIYRKL 580
             +    + AA    E     + ++ ++A +   ++ T       +R LG+SR T+YR++
Sbjct: 556 ESMHH--TDAADHGPEPSASPERQALLDALVRHRWKPT-----AAARALGISRATLYRRV 608

Query: 581 KALGI 585
              GI
Sbjct: 609 NLHGI 613