Pairwise Alignments

Query, 587 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 635 a.a., Nitrogen regulation protein NR(I) from Pseudomonas fluorescens FW300-N2E2

 Score =  298 bits (762), Expect = 6e-85
 Identities = 205/622 (32%), Positives = 325/622 (52%), Gaps = 65/622 (10%)

Query: 13  LVNSWQRS-EQAGLTQQSRAQDIRLSDNKLKERRQELAGLIDTVSRFALPLFYQLFAHSD 71
           +  SW R  E   L          L   ++ E R+ L  ++         L  QL + + 
Sbjct: 32  IARSWLRCLEDYHLDPAQNLAPTVLEHGRVLESRERLQQVLHIAGTEMTSLHQQL-SGAG 90

Query: 72  SRLILTDQHGVIIGSWGQARFREKLSQIALSSGACWQEPIKGTNAIGTALIEQKPISVIG 131
             ++LTD  GVI+        R+   +  L  GA W E  +GTN IGT L+E++ +++  
Sbjct: 91  HAVLLTDARGVILNCVTAPSERKIFERAGLWLGADWSEACEGTNGIGTCLVERQALTIHQ 150

Query: 132 EQHFIQHHHFISCSASPIFDYTGQLIGVLDITS-------EQQKHTLSTQVVVQNMVQ-- 182
           E+HF   H  ++CSASP+FD  G+L+ VLD++S       + Q HT++   +   M++  
Sbjct: 151 EEHFRGRHTGLTCSASPVFDPQGELLAVLDVSSARPDVSRQSQFHTMALVNLSAKMIESC 210

Query: 183 ----LVENQLLNQIPHGHVRIDLACEPSLLSSGWQGVIIADESGQILAHNQVAGQLLA-- 236
                 +NQ L       +R  L  E   L S  +G++  D  G+I A NQ A  LL   
Sbjct: 211 YFLRCFDNQWL-------LRFHLQAESVGLFS--EGLLAFDGEGRISAVNQSALNLLGHI 261

Query: 237 QGRVIGQSVE--------QVLPRPQTHASFIYTTTPLHSKQHR----------------- 271
           +G ++GQ VE        ++L R   +AS    + PL ++  R                 
Sbjct: 262 RGSLLGQRVEDFFDCSLDELLGRASVNAS---ASWPLRTRDGRHLFAVLRGQPRSVPVPV 318

Query: 272 ---TRALTPAS--DLHFGDAEVERCWQQANRVIDKDIRLLILGQTGVGKNEFVKALHKNS 326
               + + PA    +  GDA ++  +++A RV ++D+ LLI G+TG GK  F KA+H  S
Sbjct: 319 APALKIIEPARLPGICLGDAALQEHFRKALRVFERDVPLLIQGETGSGKEAFAKAVHHAS 378

Query: 327 QRKNGPLVAVNCGALAKELVEAELFGYVAGAFTGASHKGYQGKVRLADKGILFLDEIADL 386
           QR     VA+NC A+ + L+E+ELFGY  G+FTGA  +G +GK++ AD G LFLDEI D+
Sbjct: 379 QRAGKHFVALNCAAIPESLIESELFGYRGGSFTGARKEGMRGKLQQADGGTLFLDEIGDM 438

Query: 387 PLDAQSRLLHVLQDKTVLPVGSNHATKVDIQIIAATHKNLEQLVTQGLFRQDLYYRLSDL 446
           PL  Q+RLL VL+D+ V+P+G      V+++II+ATH+ L   V  G FR+DLYYRL+ L
Sbjct: 439 PLALQTRLLRVLEDRQVVPIG-GEPEAVNVRIISATHRQLLDRVRDGSFREDLYYRLNGL 497

Query: 447 VVELPSFQQRQDRQALIHHIHRRYSDAGQ-QICGDLMQRLLAYHWPGNLRELDSLIKVAS 505
            + LP+ ++R D+  L+  +    S A    I     Q LLA+ WPGN+R+L ++++  +
Sbjct: 498 EIPLPALRERSDKSQLLDFLLAEESGAETVSIDEPARQALLAFDWPGNVRQLRNVLRTLA 557

Query: 506 LMAEGEGVLTFNHLPTHLAQKLSHAAPTATEDDQQKDIKSTVEASLLKTYQATQGNISQT 565
            + +G G +    LP  + Q+    A    E   ++ +      +L+   +  + +++ T
Sbjct: 558 ALCDG-GRIGLEDLPAMIRQR---PAAVMVETPAERPLDDAERLALIDALERQRWHMTHT 613

Query: 566 SRLLGLSRNTIYRKLKALGILK 587
           +  LG+SRNT+YRKL+   I +
Sbjct: 614 AEQLGISRNTLYRKLRKHAIAR 635