Pairwise Alignments

Query, 587 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 663 a.a., Sigma-54 dependent transcriptional regulator from Pseudomonas fluorescens FW300-N2E2

 Score =  237 bits (605), Expect = 1e-66
 Identities = 172/532 (32%), Positives = 271/532 (50%), Gaps = 67/532 (12%)

Query: 109 EPIKGTNAIGTALIEQKPISVIGEQHFI--QHHHFISCSASPIFDYTGQLIGVLDITSEQ 166
           E ++GTN  G A++E + + V+ E++F        + C+A+PI D  G+ +G+L +T+E 
Sbjct: 137 ESVQGTNCTGLAIVEDRLVYVLAEENFGFGLRQRRMHCAAAPIRDAQGRTLGMLTLTAEP 196

Query: 167 QKHTLSTQVVVQNMVQLVENQLLNQIPHGHVRIDLACEPSLLSSGWQGVIIADESGQILA 226
                 T   VQ   + V  Q+  Q         L  + ++L    +G+++ DE G+I A
Sbjct: 197 GWFHFHTLGTVQAAAEAVSRQMALQAL-------LEEQQTVLEVLNEGLVVLDEQGRIKA 249

Query: 227 HNQVAGQLLAQGR--------VIGQS----------------VEQVLPRP-QTHASFIYT 261
            N  A QL   GR         +GQS                ++     P ++H + + +
Sbjct: 250 LNHYARQLFRVGRDLLGSPFKSLGQSELTDAVLLAGGDGVRDLDCTFELPDRSHLACLVS 309

Query: 262 TTPLHS--------KQHRTRALTP---------ASDLHFGDAE-VERCWQQANRVIDKDI 303
             PL          +  R R +T            +   G ++ +E     A      D 
Sbjct: 310 VCPLEQGGRIVSLRENRRIREITRRIIGTQASYTFETILGRSQAIEDALHLARVASRSDS 369

Query: 304 RLLILGQTGVGKNEFVKALHKNSQRKNGPLVAVNCGALAKELVEAELFGYVAGAFTGASH 363
             LILG++G GK  F +A+H  S R  GP VAVNCGA+ +ELV++ELFG+V GAFTGA+ 
Sbjct: 370 TTLILGESGTGKELFAQAIHNASDRCGGPFVAVNCGAIPRELVQSELFGHVEGAFTGAAR 429

Query: 364 KGYQGKVRLADKGILFLDEIADLPLDAQSRLLHVLQDKTVLPVGSNHATKVDIQIIAATH 423
            G  GK  LAD G +FLDEI D+  DAQ  LL VLQ+  V  VG+  + +V+++IIAATH
Sbjct: 430 GGSAGKFELADGGTIFLDEIGDMSFDAQVSLLRVLQEGEVTRVGAKKSLRVNVRIIAATH 489

Query: 424 KNLEQLVTQGLFRQDLYYRLSDLVVELPSFQ-QRQDRQALIHHIHRRYSDAGQQICGDL- 481
           +NL Q V +G FR+DLYYRL+ L + +P  + +R+D   L  H   R + + ++   DL 
Sbjct: 490 RNLSQAVAEGAFREDLYYRLNVLNLTVPPLRMRREDVPLLARHFLARCARSLRKSMQDLS 549

Query: 482 ---MQRLLAYHWPGNLRELDSLIKVASLMAEGEGVLTFNHLPTHLAQKLSHAAPTATEDD 538
              +  L AYHWPGN+REL+++I+ A+ +A  E +      P+ LA ++      +T   
Sbjct: 550 PAALDMLGAYHWPGNVRELENVIERATNLAMTELI-----EPSDLALEIRQRGRPSTWGS 604

Query: 539 -----QQKDIKSTVEASLLKTYQATQGNISQTSRLLGLSRNTIYRKLKALGI 585
                   D+ +    +++   + T+GNI   ++ L +SR  +Y K+   G+
Sbjct: 605 APGPRMAPDLGTHEMNAIIAALKDTRGNIRLAAQRLNVSRGGLYNKMSRFGL 656