Pairwise Alignments

Query, 587 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 640 a.a., Sigma-54 dependent transcriptional regulator from Pseudomonas fluorescens FW300-N2E2

 Score =  273 bits (698), Expect = 2e-77
 Identities = 187/610 (30%), Positives = 315/610 (51%), Gaps = 53/610 (8%)

Query: 13  LVNSWQRSE-QAGLTQQSRAQDIRLSDNKLKERRQELAGLIDTVSRFALPLFYQLFAHSD 71
           +  SW RS  +  L   S A+   L    +++ +Q     +D  S+    L  ++   + 
Sbjct: 32  IAQSWYRSVIKHRLDPSSSARLDVLCAEDIRQHQQRHQQYLDIASQGVSGLARRVVP-AG 90

Query: 72  SRLILTDQHGVIIGSWGQARFREK---LSQIALSSGACWQEPIKGTNAIGTALIEQKPIS 128
             ++L+D+HG+ +     AR  ++     +  L  GA W E I GTN IGT L   +P+ 
Sbjct: 91  FAVLLSDEHGITL----DARLPDQPVPYVRSGLVVGARWDESIAGTNGIGTTLAAAEPLI 146

Query: 129 VIGEQHFIQHHHFISCSASPIFDYTGQLIGVLDITSEQQKHTLSTQVVVQNMV----QLV 184
           +  E+HF+  +  +SCS +PIF+  G L G L+ T         +Q +   +V    +L+
Sbjct: 147 IHREEHFLTSNARLSCSVAPIFNAQGLLQGCLNATCLNSNGPKESQYLTLQLVILYARLI 206

Query: 185 ENQLLNQIPHGHVRIDLACEPSLLSSGWQGVIIADESGQILAHNQVAGQLLAQGR---VI 241
           EN    Q     + + L     +     + ++  D+SG+++  N  A     Q     ++
Sbjct: 207 ENAHFRQNYRDRLTLSLKPIDEIADLANEQLLALDDSGRVIGANHAAFVAHDQAHGPHLL 266

Query: 242 GQSVEQVLP-------------------RPQTHASFIYTTTPLHSKQHRTRALTPAS--- 279
           G  +EQ+LP                   R +   + +  +  + S  HR  A  PA    
Sbjct: 267 GGPIEQLLPMGVNELLRLTNGGARGLRLRARHDEALLDLSLRIPSSDHRL-APAPAKAQR 325

Query: 280 -------DLHFGDAEVERCWQQANRVIDKDIRLLILGQTGVGKNEFVKALHKNSQRKNGP 332
                   L   D  +++  ++ ++VIDKDI +LI G+TG GK  F +A+H+ S R++ P
Sbjct: 326 PRHPDLEQLAGDDPTLQQAVRRLHKVIDKDIAILITGETGTGKEAFARAIHQASARRDEP 385

Query: 333 LVAVNCGALAKELVEAELFGYVAGAFTGASHKGYQGKVRLADKGILFLDEIADLPLDAQS 392
            +A+NC A+ + L+E+ELFGY  G+FTGA  KG +GK+ LA+ G LFLDEI D+P   Q+
Sbjct: 386 FIALNCAAIPESLIESELFGYRGGSFTGADKKGMKGKLELANGGTLFLDEIGDMPAHLQT 445

Query: 393 RLLHVLQDKTVLPVGSNHATKVDIQIIAATHKNLEQLVTQGLFRQDLYYRLSDLVVELPS 452
           RLL VL ++ + P+G+     +DIQ+I ATH++L+ ++    FR+DL+YRL+ + + LP 
Sbjct: 446 RLLRVLAEREISPIGAPMPVSLDIQVICATHQDLQGMLRDKHFREDLFYRLNGMNLSLPP 505

Query: 453 FQQRQDRQALIHHIHRRYSDA-GQQICGDLMQRLLAYHWPGNLRELDSLIKVASLMAEGE 511
            ++R DR  LI  +    ++A G Q+     Q LL   WPGN+R+L + ++ A  MAE +
Sbjct: 506 LRERSDRAQLIQRLLDSQAEAKGVQLTAQARQCLLEASWPGNIRQLINALRYAVAMAE-D 564

Query: 512 GVLTFNHLPTHLAQKLSHAAPTATEDDQQKDIKSTVEASLLKTYQATQGNISQTSRLLGL 571
           G +  + LP  L Q  ++A   +     +        ++LL+  +  + NIS  +  LG+
Sbjct: 565 GNVDVDCLPAELLQGDAYARLASPSVGSEPP-----ASNLLEILRRHRWNISAAAAELGV 619

Query: 572 SRNTIYRKLK 581
           +R+T+YR++K
Sbjct: 620 ARSTLYRQMK 629