Pairwise Alignments

Query, 587 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 409 a.a., Flagellar regulatory protein FleQ from Pseudomonas fluorescens FW300-N2E2

 Score =  189 bits (480), Expect = 2e-52
 Identities = 120/339 (35%), Positives = 192/339 (56%), Gaps = 17/339 (5%)

Query: 251 RPQTHASFIYTTTPLHSKQHRTRALTPASDLHFGDAEV-ERCWQQANRVIDKDIRLLILG 309
           RP  +   + T       Q R+ +  P+++   G +    +   +  RV    + +L+LG
Sbjct: 83  RPILNEHGVITAYVERLTQVRSASARPSNEGLVGSSPAFNQALLELQRVAPSMLPVLLLG 142

Query: 310 QTGVGKNEFVKALHKNSQRKNGPLVAVNCGALAKELVEAELFGYVAGAFTGASHKGYQGK 369
           ++G GK  F +A+H+ S+R  GP V V+C  L + L E+ELFG+  GAFTGA+ +   G 
Sbjct: 143 ESGTGKELFARAVHETSERAAGPFVVVDCSGLTETLFESELFGHEKGAFTGATTRKV-GL 201

Query: 370 VRLADKGILFLDEIADLPLDAQSRLLHVLQDKTVLPVGSNHATKVDIQIIAATHKNLEQL 429
           V  A  G LFLDEI D+PL  Q +LL +++  T   VGS      D +++AATHK LE++
Sbjct: 202 VETAQGGTLFLDEIGDVPLAMQVKLLRLIESGTYRRVGSVETQHADFRLVAATHKPLEKM 261

Query: 430 VTQGLFRQDLYYRLSDLVVELPSFQQRQDRQALIHHIHRRYSDAGQQ---ICGDLMQRLL 486
           V +G FRQDLYYR+S   + LP  + R +   L+     + S  G++   I  + + +L 
Sbjct: 262 VEKGEFRQDLYYRISVFPIHLPPLRHRLEDIGLLVDSFLQRSGIGKRRLTIDPEALMQLQ 321

Query: 487 AYHWPGNLRELDSLIKVASLMAEGEGVLTFNHLPTHLAQKLSHAAPTATEDDQQKDIKST 546
            + WPGN+REL ++++ A+L A+ +GV+   HLP   A  L+ +AP  T     +D++  
Sbjct: 322 RFAWPGNIRELRNVLERAALFAD-DGVIHALHLP---APPLALSAPALTPARDSRDLE-- 375

Query: 547 VEASLLKTYQATQGNISQTSRLLGLSRNTIYRKLKALGI 585
               L+ T++ T+   S+ +R LG+S  T+YR+LK  G+
Sbjct: 376 ---QLVATFKGTR---SELARHLGVSERTLYRRLKEQGL 408