Pairwise Alignments

Query, 587 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 614 a.a., sigma-54 dependent transcriptional regulator from Pseudomonas fluorescens FW300-N2E2

 Score =  369 bits (946), Expect = e-106
 Identities = 235/609 (38%), Positives = 342/609 (56%), Gaps = 36/609 (5%)

Query: 7   LSHVNWLVNSWQRSEQAGLTQQSRAQDIRLSDNKLKERRQELAGLIDTVSRFALPLFYQL 66
           LSH   +  SW R    GL  QS     +L    + +  +    L+ T  +  LP +  +
Sbjct: 8   LSHEAIIQASWSRCRAFGLNHQSVPAFDQLPAQGIAQLLESQHSLVQTTHQEVLPYYENI 67

Query: 67  FAHSDSRLILTDQHGVIIGSWGQARFREKLSQIALSSGACWQEPIKGTNAIGTALIEQKP 126
            ++S+  ++L D  G ++ SWG  RF E       S+GA W E   GTNAIGTAL  ++ 
Sbjct: 68  LSNSNCLIMLADNQGQVLTSWGTQRFIEPKLAHGFSAGASWMERCTGTNAIGTALACEQA 127

Query: 127 ISVIGEQHFIQHHHFISCSASPIFDYTGQLIGVLDITSEQQKHTLSTQVVVQNMVQLVEN 186
           + +  ++HF++ + F++ SA+PIFD   ++I VLD++S+       T  +V+ M Q VEN
Sbjct: 128 VHIEHDEHFLKANRFMTGSAAPIFDAERKVIAVLDVSSDSYLPPSHTLGMVKMMSQTVEN 187

Query: 187 QLLNQIPHG-HVRIDLACEPSLLSSGWQGVIIADESGQILAHNQVAGQLL--AQGRVIGQ 243
           +L+  +  G H ++      + L S W G++I DESGQ+L+ N+ A  LL  +  RV  +
Sbjct: 188 RLILNLFRGEHFQLTFNTGLNNLDSQWAGLLIFDESGQVLSANRRADNLLGLSLSRVSIE 247

Query: 244 SVEQV-----LPRP-------QTHASFIYTTTPLHSKQHRTRALT---------PASD-- 280
           S+ +V     L +P       Q   S  +        Q   +A           PAS+  
Sbjct: 248 SLFKVSLLELLNQPDGLPFALQASGSNRFQCLLRRPSQVSIKARVFTETAPAPAPASNAI 307

Query: 281 ----LHFGDAEVERCWQQANRVIDKDIRLLILGQTGVGKNEFVKALHKNSQRKNGPLVAV 336
               LHFGD+ VE+  +QA R+++KDI LLI G+TGVGK  FVKALH+ S R   P +AV
Sbjct: 308 SLNTLHFGDSRVEKAVRQAERLLEKDIPLLIHGETGVGKEVFVKALHQASSRCKQPFIAV 367

Query: 337 NCGALAKELVEAELFGYVAGAFTGASHKGYQGKVRLADKGILFLDEIADLPLDAQSRLLH 396
           NC A+  ELVE+ELFGY  GAFTGA+ KG  G +R AD+G LFLDEI D+PL  Q+RLL 
Sbjct: 368 NCAAIPAELVESELFGYEKGAFTGANQKGSIGLIRKADRGTLFLDEIGDMPLPTQARLLR 427

Query: 397 VLQDKTVLPVGSNHATKVDIQIIAATHKNLEQLVTQGLFRQDLYYRLSDLVVELPSFQQR 456
           VLQ++ V PVGS     VDI+II+AT+++L + V  G FR+DLYYR+  L +ELP  ++R
Sbjct: 428 VLQERCVQPVGSAELFPVDIRIISATNRSLREQVQLGRFREDLYYRIGGLTLELPPLRER 487

Query: 457 QDRQALIHHI--HRRYSDAGQQICGDLMQRLLAYHWPGNLRELDSLIKVASLMAEGEGVL 514
            D+QAL   +  H R       +  +++     + WPGNLR++ S+++VA  MAE E  +
Sbjct: 488 SDKQALFKRLWEHHREPTQWAGLSREVLDLFERHPWPGNLRQVSSVLQVALAMAE-EQPI 546

Query: 515 TFNHLPTHLAQKLSHAAPTATEDDQQKDIKSTVEASLLKTYQATQGNISQTSRLLGLSRN 574
              HLP      L    P  T +    D+    +  L +  QA  GNIS  +R LG+SRN
Sbjct: 547 RPEHLPDDFFVDL-EMEPVETPEPLTVDLNDAED--LNRQLQAVGGNISHLARRLGVSRN 603

Query: 575 TIYRKLKAL 583
           T+Y++L+ L
Sbjct: 604 TLYKRLRQL 612