Pairwise Alignments

Query, 587 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 629 a.a., Transcriptional activator of acetoin/glycerol metabolism from Pseudomonas stutzeri RCH2

 Score =  307 bits (786), Expect = 1e-87
 Identities = 196/610 (32%), Positives = 318/610 (52%), Gaps = 51/610 (8%)

Query: 13  LVNSWQRS-EQAGLTQQSRAQDIRLSDNKLKERRQELAGLIDTVSRFALPLFYQLFAHSD 71
           +  SW+R  EQ  L   S      +   +L E R  L  +I  V+ + +   +Q    S 
Sbjct: 31  IARSWRRCLEQHQLDPTSPRAPCVIERPRLNEHRDRLDRVI-AVAHWQMNSLHQQLGSSG 89

Query: 72  SRLILTDQHGVIIGSWGQARFREKLSQIALSSGACWQEPIKGTNAIGTALIEQKPISVIG 131
             ++LTD  GV+I S      R +  +  L  GA W E  +GTN +G  L+E++ +++  
Sbjct: 90  HAVLLTDASGVVIDSVADQAERAEFQRAGLWLGAVWNEATEGTNGVGLCLLERQALTIRR 149

Query: 132 EQHFIQHHHFISCSASPIFDYTGQLIGVLDITSEQQ----KHTLSTQVVVQNMVQLVENQ 187
           ++HF   H  ++CSASP+FD  G L+ VL+++S ++    +    T  +     +L+E+ 
Sbjct: 150 DEHFRGRHAALTCSASPVFDAEGGLLAVLNVSSAREDLSRQRRFHTMALTNLSAKLIESC 209

Query: 188 LLNQIPHGHVRIDLACEPSLLSSGWQGVIIADESGQILAHNQVAGQLLAQGR--VIGQSV 245
              Q   G   +    +P  +    +G++  D  G+I   N+ A  LLA GR  ++GQ +
Sbjct: 210 FFLQHCEGDYLLRFHAQPEYIGLLSEGLLAFDGDGRITTINETALNLLASGREALLGQPL 269

Query: 246 EQVLP----------RPQTHASFIYTTTPLHSKQHRT------------------RALTP 277
           E +L           RPQ       T  PLH+   +                    A   
Sbjct: 270 ETILDVRLEQLLQRARPQPG-----TCWPLHTHDGQRLYCQLRGPQMRVVVAPPKEAAAQ 324

Query: 278 ASDLHFGDAEVERCWQQANRVIDKDIRLLILGQTGVGKNEFVKALHKNSQRKNGPLVAVN 337
              L   D  +   + +A +V+++D+ +L+ G+TG GK  F  ALH+ S R   P VA+N
Sbjct: 325 VGGLCLLDPSMRTDFSRALKVLERDVPVLLQGETGTGKEAFASALHRASSRAGRPFVALN 384

Query: 338 CGALAKELVEAELFGYVAGAFTGASHKGYQGKVRLADKGILFLDEIADLPLDAQSRLLHV 397
           C A+ + L+E+ELFGY  G+FTGA  +G  GK+  A+ GILFLDEI D+PL  Q+RLL V
Sbjct: 385 CAAIPETLIESELFGYRGGSFTGARREGMVGKLEQANGGILFLDEIGDMPLALQTRLLRV 444

Query: 398 LQDKTVLPVGSNHATKVDIQIIAATHKNLEQLVTQGLFRQDLYYRLSDLVVELPSFQQRQ 457
           L+++ V P+G+    +++I++I+A+H +L  LV  G FR+DLYYRL  L+V LP  ++R 
Sbjct: 445 LEERKVTPLGAAAPAELNIRLISASHHDLRALVAGGAFREDLYYRLGGLMVALPPLRERS 504

Query: 458 DRQALIHHIHRRYSDAGQQICGD--LMQRLLAYHWPGNLRELDSLIKVASLMAEGEGVLT 515
           D+  L+ H+    +  G+ I  D    Q LLAY WPGN+R++ +L++    ++E +G + 
Sbjct: 505 DKAELLDHLLAEEAQ-GESISLDPAARQALLAYRWPGNVRQMRNLLRTLVALSE-QGRIA 562

Query: 516 FNHLPTHLAQKLSHAAPTATEDDQQKDIKSTVEASLLKTYQATQGNISQTSRLLGLSRNT 575
            + +   L  ++  A      D  +  ++S    +LL   +     +S+ +  LG+SRNT
Sbjct: 563 VDEVLAVLPAEIGEA------DAMRDPLQSAEREALLSVLRERHWQVSRVAEELGISRNT 616

Query: 576 IYRKLKALGI 585
           +YRKL+  GI
Sbjct: 617 LYRKLRKHGI 626