Pairwise Alignments

Query, 587 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 643 a.a., Transcriptional activator of acetoin/glycerol metabolism from Pseudomonas stutzeri RCH2

 Score =  280 bits (717), Expect = 1e-79
 Identities = 186/620 (30%), Positives = 310/620 (50%), Gaps = 58/620 (9%)

Query: 13  LVNSWQRSEQAGLTQQSRAQDIRLSDNKLKERRQELAGLIDTVSRFALPLFYQLFAHSDS 72
           +  SW R         +R  + R    ++    Q+ A  +  V+R  +   Y+  A    
Sbjct: 31  IARSWHRCVHDYGLDPARPAEARFVPRQVLREHQDQADELINVARAGVEQLYRQIAELGY 90

Query: 73  RLILTDQHGVIIGSWGQARFREKLSQIALSSGACWQEPIKGTNAIGTALIEQKPISVIGE 132
            ++LTD  G+ +   G     +   +  L  G+ W E   GT A+GT + EQ+ ++    
Sbjct: 91  VILLTDNRGIAVQFLGDPADEKAHRKTGLFLGSDWGEDHAGTCAVGTCIKEQQALTCHQH 150

Query: 133 QHFIQHHHFISCSASPIFDYTGQLIGVLDITSEQQKHTLSTQVVVQNMVQLVENQLLNQI 192
            HF   H  ++C+A P+F+  GQL+ VLDI++     T  +Q     +V+    Q    I
Sbjct: 151 DHFSVWHTNLTCTAVPMFNPHGQLLAVLDISALHSPPTKDSQTFALQLVK----QYARMI 206

Query: 193 PHGHVRIDLACEPSLLSSGWQGVIIAD--------ESGQILAHNQVAGQLLAQ------- 237
              +        P L   G +  ++ +        + G++LA N  A  LLA+       
Sbjct: 207 EDAYFMRVYRERPILCFDGSREFVVINRRYLLALGDDGELLAGNTAARGLLAEHGLLMPG 266

Query: 238 --GRVIGQSVEQ--------VLPRP----------QTHASFIYTTTPLHSKQHRTRALTP 277
             G +    ++Q        VL  P          +TH   ++    +  ++     +  
Sbjct: 267 PFGTLAQARIDQLFDCELSDVLSIPYASHDQVRAFRTHRHQLFFAALMEPRRRVPEPVER 326

Query: 278 ASD--------LHFGDAEVERCWQQANRVIDKDIRLLILGQTGVGKNEFVKALHKNSQRK 329
           ++         L   D  + +   +A R+  + + +L+ G+TG GK    KALH++  R+
Sbjct: 327 SAPGGHSALDALADDDPVMRKMLARARRLCSEPLNVLLNGETGTGKERLAKALHESGCRR 386

Query: 330 NGPLVAVNCGALAKELVEAELFGYVAGAFTGASHKGYQGKVRLADKGILFLDEIADLPLD 389
           + P VA+NCGA+ + L+E+ELFGY  G FTGA  KG +G ++ AD G LFLDEI D+PL 
Sbjct: 387 SKPFVAINCGAMPESLIESELFGYAPGTFTGARSKGMRGLIQQADGGTLFLDEIGDMPLH 446

Query: 390 AQSRLLHVLQDKTVLPVGSNHATKVDIQIIAATHKNLEQLVTQGLFRQDLYYRLSDLVVE 449
            Q+RLL VL ++ V+P+G++   KVDI+++AA+H++L Q+V  G FR+DL+YRL+   ++
Sbjct: 447 LQTRLLRVLAEQEVMPLGADKPVKVDIRVVAASHRDLRQMVESGAFREDLFYRLNGASLK 506

Query: 450 LPSFQQRQDRQALIHHIHRRYSD---AGQQICGDLMQRLLAYHWPGNLRELDSLIKVASL 506
           LP  ++R D+  LI  +    ++       + GD M  LLAY WPGN+REL ++++ A  
Sbjct: 507 LPPLRERADKGFLIERVFAELAEGRPGNPHLRGDAMSALLAYPWPGNIRELRNVLQYALA 566

Query: 507 MAEGEGVLTFNHLPTH-LAQKLSHAAPTATEDDQQKDIKSTVEASLLKTYQATQGNISQT 565
             EG+ + T   LP   L   L+    +AT  + +        A+L +T +  + N+S  
Sbjct: 567 TCEGDEI-TVQDLPDECLPPILARCRQSATAAEPES------AAALRETLRRHRWNVSAA 619

Query: 566 SRLLGLSRNTIYRKLKALGI 585
           +R LG+SR T+YR+++ LGI
Sbjct: 620 ARELGVSRPTMYRRMRVLGI 639