Pairwise Alignments

Query, 587 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 505 a.a., Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains from Pseudomonas stutzeri RCH2

 Score =  188 bits (478), Expect = 4e-52
 Identities = 116/303 (38%), Positives = 173/303 (57%), Gaps = 21/303 (6%)

Query: 292 WQQANRVIDKDIRLLILGQTGVGKNEFVKALHKNSQRKNGPLVAVNCGALAKELVEAELF 351
           +Q   +V+   + +L+ G+TG GK    +A+H    R++ P V  NC +L ++L+E+ELF
Sbjct: 210 YQLIGKVLHSPVNVLLTGETGTGKELVARAIHDCGFRRSKPFVVQNCASLPEQLLESELF 269

Query: 352 GYVAGAFTGASHKGYQGKVRLADKGILFLDEIADLPLDAQSRLLHVLQDKTVLPVGSNHA 411
           GY  GAFTGA  +   G +  A+ G LFLDEI D+PL  Q++LL VLQ+  V P+GS   
Sbjct: 270 GYRKGAFTGAD-RDRSGLLDAANGGTLFLDEIGDMPLLLQAKLLRVLQEGEVRPLGSTET 328

Query: 412 TKVDIQIIAATHKNLEQLVTQGLFRQDLYYRLSDLVVELPSFQQRQDRQALIHHIHRRYS 471
            KVD++I+AATH++L   V  GLFR+DL+YRLS   +ELP  ++R +    I  + R ++
Sbjct: 329 HKVDVRIVAATHRDLRSQVENGLFREDLFYRLSHFPIELPPLRERDED---ILRLARHFA 385

Query: 472 DAG-----QQIC---GDLMQRLLAYHWPGNLRELDSLIKVASLMAEGEGVLTFNHLPTHL 523
           D       + +C      ++RL  Y +PGN+REL  L++ A L+ EG G L   HL  H+
Sbjct: 386 DKACAFLQRDLCRWSDAALERLAGYAFPGNVRELKGLVERAVLLCEG-GELLPEHLNLHV 444

Query: 524 AQKLSHAAPTATEDDQQKDIKSTVEASLL-KTYQATQGNISQTSRLLGLSRNTIYRKLKA 582
              L  +          ++    VE SLL    +   GN SQ +R LGL R T+  +++ 
Sbjct: 445 EASLDSSL-------NLRERMERVERSLLMDCLRKNGGNQSQAARELGLPRRTLLYRMER 497

Query: 583 LGI 585
           L I
Sbjct: 498 LNI 500