Pairwise Alignments

Query, 587 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 499 a.a., Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains from Pseudomonas stutzeri RCH2

 Score =  190 bits (482), Expect = 1e-52
 Identities = 119/317 (37%), Positives = 172/317 (54%), Gaps = 24/317 (7%)

Query: 293 QQANRVIDKDIRLLILGQTGVGKNEFVKALHKNSQRKNGPLVAVNCGALAKELVEAELFG 352
           +QA R    D  +L+ G+TG GK    + +H  S R  GP VAVN  A+ + LVEAELFG
Sbjct: 180 RQARRAAQLDATVLLRGETGTGKELLAQGIHNLSPRARGPFVAVNVAAIPESLVEAELFG 239

Query: 353 YVAGAFTGASHKGYQGKVRLADKGILFLDEIADLPLDAQSRLLHVLQDKTVLPVGSNHAT 412
              GAFTGA  K   GK  +A+ G LFLDEI DLPL  Q++LL VLQ++ V P+GSN   
Sbjct: 240 TAPGAFTGADRKARIGKFEVANGGTLFLDEIGDLPLPLQAKLLRVLQEQEVEPLGSNQVK 299

Query: 413 KVDIQIIAATHKNLEQLVTQGLFRQDLYYRLSDLVVELPSFQQR-QDRQALIHH----IH 467
            +++++IAATH +LE  V  G FR DLYYRL+ L + +P  ++R  D  A++ H    I 
Sbjct: 300 ALNVRVIAATHIDLEAKVAAGQFRDDLYYRLNVLALRVPPLRERSSDIPAVVEHLLDDIA 359

Query: 468 RRYSDAGQQICGDLMQRLLAYHWPGNLRELDSLIKVASLMAEGEGVLTFNHLPTHLAQKL 527
            R      ++  + +  L A  W GN+REL +L++ A L A+G  +   + LP    Q  
Sbjct: 360 NRSGQPPMELSPEALALLCAQPWRGNVRELGNLLERAQLSADGPQLQAAHLLPLLGEQAR 419

Query: 528 SHAAP---------------TATEDDQQKDIKSTV----EASLLKTYQATQGNISQTSRL 568
           S  AP               T +E+   + +  T+      +L     A +GN  + +  
Sbjct: 420 SADAPAYATSAPSAALPTEATPSEELPLQPLAQTIAQAERRALQSALAACKGNRRRAAME 479

Query: 569 LGLSRNTIYRKLKALGI 585
           LG+SR ++Y KL+  G+
Sbjct: 480 LGISRASLYSKLQQHGL 496