Pairwise Alignments

Query, 587 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 680 a.a., hypothetical protein from Xanthomonas campestris pv. campestris strain 8004

 Score =  283 bits (725), Expect = 1e-80
 Identities = 191/621 (30%), Positives = 319/621 (51%), Gaps = 52/621 (8%)

Query: 13  LVNSWQRSEQAGLTQQSRAQDIRLSDNKLKERRQELAGLIDTVSRFALPLFYQLFAHSDS 72
           L  SW+R  +          D  + D      RQ+  G +  ++R  +   Y+  A S  
Sbjct: 61  LSRSWRRCLEDYALLPEALPDPMVHDALHVRERQQRLGDVLRIARVEMENLYEQIAGSGY 120

Query: 73  RLILTDQHGVIIGSWGQARFREKLSQIALSSGACWQEPIKGTNAIGTALIEQKPISVIGE 132
            +I  D    ++ S        +  Q+ L +GA W E  +GTN +GT   E+  +SV   
Sbjct: 121 AVIFADADATVLHSVHDPTLLREFRQVGLFAGASWAERHQGTNGLGTCAAERTAVSVHRG 180

Query: 133 QHFIQHHHFISCSASPIFDYTGQLIGVLDITSEQ-------QKHTLSTQVVVQNMVQLVE 185
           +H++  H  +SC ++PI D  G L+ VLD ++         Q+HT++  +V  +  Q+  
Sbjct: 181 EHYLTRHLPLSCCSAPILDAHGGLLAVLDASTPNAQDGKQIQRHTVA--LVSMSAAQISR 238

Query: 186 NQLLNQIPHGHVRIDLACEPSLLSSGWQGVIIADESGQILAHNQ-VAGQL--LAQGRVIG 242
           +  LNQ  H  + +     P       + +I     G++LA N+ V  QL  L + +++G
Sbjct: 239 SHFLNQFGHAFI-LRFHSRPEFAGLLHEALIAIGADGRVLAVNEAVLEQLGKLDRSQLVG 297

Query: 243 QSVEQVLP--------RPQTHASFIYTTT-PLHSKQH-------RTRALTPA-------- 278
           + + QV+         R  + A  +++     H ++        R R   PA        
Sbjct: 298 RDISQVMQLDFDTIEHRAGSDAGTLWSIRCACHGRRFYALVRPPRARPALPAVGGPAQPA 357

Query: 279 --SDLHFG-----DAEVERCWQQANRVIDKDIRLLILGQTGVGKNEFVKALHKNSQRKNG 331
             ++L+ G     D  +      A ++    + +L+ G TG GK EF KA+H+ S   +G
Sbjct: 358 TETELNPGEHVGSDPRMRHNLANALKLAAHRVSILLRGDTGTGKEEFAKAVHRGSPWASG 417

Query: 332 PLVAVNCGALAKELVEAELFGYVAGAFTGASHKGYQGKVRLADKGILFLDEIADLPLDAQ 391
             VA+NC A+ + L+E+ELFGY  GAFT A+ +G  GK+  A  G LFLDEI D+PL  Q
Sbjct: 418 AFVAINCAAIPEALIESELFGYARGAFTDAAREGRHGKLLQASGGTLFLDEIGDMPLPLQ 477

Query: 392 SRLLHVLQDKTVLPVGSNHATKVDIQIIAATHKNLEQLVTQGLFRQDLYYRLSDLVVELP 451
           SRLL VL+++ V P+GS  A  +++ +I+A+H++L Q V+ G FR+DLYYRL+ +V+ LP
Sbjct: 478 SRLLRVLEEQCVTPLGSERAVPLELHVISASHRDLAQRVSAGEFREDLYYRLNGVVLHLP 537

Query: 452 SFQQRQDRQALIHHIHR-RYSDAGQQICGDLMQRLLAYHWPGNLRELDSLIKVASLMAEG 510
             ++R D+  LI  + R   ++ G +I  + M +LL+Y WPGNLR+L ++++ A+++   
Sbjct: 538 PLRERSDKAELIRTLLREENNERGVRISEEAMHKLLSYAWPGNLRQLRNVLRTAAVLC-S 596

Query: 511 EGVLTFNHLPTHL-----AQKLSHAAPTATEDDQQKDIKSTVEASLL-KTYQATQGNISQ 564
           + V+   +LP  +     A  L      A +D   +      E  +L +  +  + N+S+
Sbjct: 597 DAVIRLPNLPQEIVDAGSAPCLVDGRAVAADDMPGRVALDQAERLVLQQQLERHRWNVSR 656

Query: 565 TSRLLGLSRNTIYRKLKALGI 585
           T+  LG+SRNT+YRKL+  G+
Sbjct: 657 TADALGISRNTLYRKLRKHGL 677