Pairwise Alignments

Query, 587 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 617 a.a., Helix-turn-helix, Fis-type from Pseudomonas syringae pv. syringae B728a

 Score =  380 bits (977), Expect = e-110
 Identities = 238/611 (38%), Positives = 353/611 (57%), Gaps = 42/611 (6%)

Query: 7   LSHVNWLVNSWQRSEQAGLTQQSRAQDIRLSDNKLKERRQELAGLIDTVSRFALPLFYQL 66
           L+H   + +SW R    GL+ Q+R    +L   ++    +   GL+ T  +  LP++  +
Sbjct: 8   LAHDIIIQDSWTRCRDFGLSHQTRPSFGQLPGTEVSRLLERHHGLVQTTHQEVLPVYENI 67

Query: 67  FAHSDSRLILTDQHGVIIGSWGQARFREKLSQIALSSGACWQEPIKGTNAIGTALIEQKP 126
            ++S   ++L D+ G ++ SWG  RF E         GA W E   GTNAIGTAL  ++ 
Sbjct: 68  LSNSSCLILLADRQGQLLKSWGAQRFVESSQAQGFMPGASWNERGTGTNAIGTALACEEA 127

Query: 127 ISVIGEQHFIQHHHFISCSASPIFDYTGQLIGVLDITSEQQKHTLSTQVVVQNMVQLVEN 186
           I +  ++HF++ + F++ SASPIFD   ++I VLD++S+       T  +V+ M Q VEN
Sbjct: 128 IHIEPDEHFLKANRFMTGSASPIFDADRRIIAVLDVSSDSFLPPSHTLGMVKMMSQSVEN 187

Query: 187 QL-LNQIPHGHVRIDLACEPSLLSSGWQGVIIADESGQILAHNQVAGQLLAQGRVIGQSV 245
           +L L+Q    H ++      + L S W G++I DESGQIL  N+ A  LL      G S+
Sbjct: 188 RLILDQFRDSHFQLIFNTGLNNLDSQWAGLLIFDESGQILCANRRADTLLGTAPA-GASI 246

Query: 246 EQVLPRP------QTHAS--------------FIYTTTPLHSKQHRTRAL-TPASD---- 280
           E +   P      +T A                +   T    K H  +A   PA+     
Sbjct: 247 ETLFKCPILQLLSETEARPFALHAFGNNRFQCLLKRPTRKPLKLHCVQAAQVPAAPRNLD 306

Query: 281 ---LHFGDAEVERCWQQANRVIDKDIRLLILGQTGVGKNEFVKALHKNSQRKNGPLVAVN 337
              +  GDA+VE+  +QA R+++KDI LLI G+TGVGK  FVKALH+ S R + PL+AVN
Sbjct: 307 LQAISLGDAKVEKAVRQAQRLLEKDIPLLIHGETGVGKEVFVKALHQASARASQPLIAVN 366

Query: 338 CGALAKELVEAELFGYVAGAFTGASHKGYQGKVRLADKGILFLDEIADLPLDAQSRLLHV 397
           C A+  +LVEAELFGY  GAFTGA+ KG  G +R ADKG LFLDE+ D+P+  Q+RLL V
Sbjct: 367 CAAIPADLVEAELFGYERGAFTGANQKGSIGLIRKADKGTLFLDEVGDMPMPVQARLLRV 426

Query: 398 LQDKTVLPVGSNHATKVDIQIIAATHKNLEQLVTQGLFRQDLYYRLSDLVVELPSFQQRQ 457
           LQ++ V P+GS+    VDI++I+AT++ L   V  GLFRQDLYYR+S L +ELP  ++R 
Sbjct: 427 LQERCVQPLGSSELYPVDIRLISATNRGLRDQVQAGLFRQDLYYRISGLSIELPPLRERT 486

Query: 458 DRQALIHHIHRRYSDAGQQ--ICGDLMQRLLAYHWPGNLRELDSLIKVASLMAEGEGVLT 515
           D+ ALI  I  R+ DA Q+     ++++    + WPGNLR+L+S+I+VA  +A+ + + T
Sbjct: 487 DKHALIQRIWERHRDAHQRAGFSREVLELFEHHPWPGNLRQLNSVIQVALALADEQPIGT 546

Query: 516 FNHLPTHLAQKLSHA-----APTATEDDQQKDIKSTVEASLLKTYQATQGNISQTSRLLG 570
            +HLP       +HA      P  T++   +   S     L + +QA  GN+SQ ++ LG
Sbjct: 547 -DHLPEDFLLD-AHADEECRVPLRTQESATRFHSS---EDLGQLFQAAGGNVSQLAKRLG 601

Query: 571 LSRNTIYRKLK 581
           +SRNT+Y++L+
Sbjct: 602 VSRNTLYKRLR 612