Pairwise Alignments

Query, 587 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 602 a.a., sigma-54 dependent transcriptional regulator (RefSeq) from Shewanella amazonensis SB2B

 Score =  493 bits (1268), Expect = e-143
 Identities = 273/593 (46%), Positives = 380/593 (64%), Gaps = 25/593 (4%)

Query: 12  WLVNSWQRSEQAGLTQQSRAQDIRLSDNKLKERRQELAGLIDTVSRFALPLFYQLFAHSD 71
           WL +SW+RSE AGL++ +R  +++LS  +L ER +    LI  V   ALPLF +L AH+D
Sbjct: 8   WLADSWRRSEGAGLSE-TRPGELKLSRVELDERCERHRQLIALVESEALPLFTRLMAHTD 66

Query: 72  SRLILTDQHGVIIGSWGQARFREKLSQIALSSGACWQEPIKGTNAIGTALIEQKPISVIG 131
           SRLIL+D  G ++  WG +R+ ++L+ +AL  G  W E  KGTNAIGTAL  ++ +SV+G
Sbjct: 67  SRLILSDAEGFVLRHWGLSRYSDRLANVALDCGVNWLEEHKGTNAIGTALRAKEALSVVG 126

Query: 132 EQHFIQHHHFISCSASPIFDYTGQLIGVLDITSEQQKHTLSTQVVVQNMVQLVENQLLNQ 191
           EQHF + H F+SC+ASPIF  +G+LIG LDITSE+ KH   T +++ ++ Q VE  LL  
Sbjct: 127 EQHFCRPHRFMSCTASPIFSPSGELIGALDITSERLKHNQQTLLLISSLAQQVETALLCS 186

Query: 192 IPHGHVRIDLACEPSLLSSGWQGVIIADESGQILAHNQVAGQLLA-------QGRVIG-- 242
           +P G  R+DLA    LLSSGWQG++IAD+ G++L  N +A Q L         G ++G  
Sbjct: 187 LPGGRFRVDLAASRQLLSSGWQGILIADDEGRLLGLNPMARQYLGGASPGMQLGELLGDD 246

Query: 243 -QSVEQVLPRPQTH-ASFIYTTTPLHSKQHRTRALTPASDLHFGDAEVERCWQQANRVID 300
            ++ +    R + H A+       L  + ++  +L     L F D ++E  WQQA +V+ 
Sbjct: 247 WRAQQAQCLRGELHLATSAIGEGALWIQTNKASSLHGVKPLRFHDPQLETAWQQARKVVS 306

Query: 301 KDIRLLILGQTGVGKNEFVKALHKNSQRKNGPLVAVNCGALAKELVEAELFGYVAGAFTG 360
           + I LL+ G+TGVGK  FV+ L+++S R +G LVAVNC AL  EL+EAELFGY  GAFTG
Sbjct: 307 RKIPLLVQGETGVGKEHFVRQLYQDS-RLDGELVAVNCAALPTELIEAELFGYQGGAFTG 365

Query: 361 ASHKGYQGKVRLADKGILFLDEIADLPLDAQSRLLHVLQDKTVLPVGSNHATKVDIQIIA 420
           AS +G+ GKVR AD G LFLDEI +LPL AQ RLL VLQ++ V PVG   + +VDIQ++A
Sbjct: 366 ASRQGHLGKVRQADGGFLFLDEIGELPLAAQGRLLRVLQEREVTPVGGLKSHRVDIQVVA 425

Query: 421 ATHKNLEQLVTQGLFRQDLYYRLSDLVVELPSFQQRQDRQALIHHIHRRY----SDAGQQ 476
           ATH +L ++V  G FR+DLY+RL+ L V LP  +QR D+  LIH +HR+Y        Q+
Sbjct: 426 ATHMDLAEMVRDGRFREDLYFRLNGLQVSLPPLRQRADKSRLIHKLHRQYRVNPPGDEQR 485

Query: 477 ICGDLMQRLLAYHWPGNLRELDSLIKVASLMAEGEGVLTFNHLPTHLAQKLSHAAP---- 532
           +C  L+  L AY WPGNLRELD+L++VA LMAEGE  L+  HL     + L  A P    
Sbjct: 486 LCPQLLALLEAYAWPGNLRELDNLMQVACLMAEGERELSQAHLSDAHRRALMQARPFYSG 545

Query: 533 ----TATEDDQQKDIKSTVEASLLKTYQATQGNISQTSRLLGLSRNTIYRKLK 581
                +++   +  +K+ ++  +  T     GNIS+ +R LG+SRN IYR LK
Sbjct: 546 RMNSESSQSSAESSLKAELDGRIQNTLADCDGNISEAARRLGVSRNLIYRSLK 598