Pairwise Alignments

Query, 587 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 470 a.a., response regulator receiver protein (RefSeq) from Shewanella amazonensis SB2B

 Score =  189 bits (479), Expect = 3e-52
 Identities = 132/391 (33%), Positives = 203/391 (51%), Gaps = 34/391 (8%)

Query: 218 ADESGQILAHNQVAGQLLAQGRVIGQSVEQVLPRPQTHASFIYTTTPLHSKQHRTRALTP 277
           +D    + A+   A + L +   I +++  V  R  THAS         + Q  T     
Sbjct: 86  SDLDSAVAAYQSGAFEYLPKPFDIDEAIALV-ERALTHASE-------QAPQANTSEPVK 137

Query: 278 ASDLHFGDAEVERCWQQANRVIDKDIRLLILGQTGVGKNEFVKALHKNSQRKNGPLVAVN 337
           A ++      ++  ++   R+    I +LI GQ+G GK     ALHK+S RK+ P +A+N
Sbjct: 138 APEIIGEAPAMQEVFRAIGRLSRSSISVLINGQSGTGKELVAGALHKHSPRKDKPFIALN 197

Query: 338 CGALAKELVEAELFGYVAGAFTGASHKGYQGKVRLADKGILFLDEIADLPLDAQSRLLHV 397
             A+ K+L+E+ELFG+  GAFTGA+    QG+   A+ G LFLDEI D+PLD Q+RLL V
Sbjct: 198 MAAIPKDLIESELFGHEKGAFTGAAGVR-QGRFEQANGGTLFLDEIGDMPLDVQTRLLRV 256

Query: 398 LQDKTVLPVGSNHATKVDIQIIAATHKNLEQLVTQGLFRQDLYYRLSDLVVELPSF-QQR 456
           L D     VG +   +VD++IIAATH++LE+LV QG FR+DL++RL+ + V LP   ++R
Sbjct: 257 LADGQFYRVGGHSPVQVDVRIIAATHQDLERLVQQGQFREDLFHRLNVIRVHLPPLRERR 316

Query: 457 QDRQALIHHI----HRRYSDAGQQICGDLMQRLLAYHWPGNLRELDSLIKVASLMAEGEG 512
           +D   L  H      R      + +  +   +L    WPGN+R+L++  +  ++MA G+ 
Sbjct: 317 EDIPQLTRHFLAAAAREIGVEAKILAKETAAKLQQLPWPGNVRQLENTCRWLTVMASGQE 376

Query: 513 VLTFNHLPTHLAQKLSHAAPTAT-------------------EDDQQKDIKSTVEASLLK 553
           +L  +  P      + H A                       E D   D++ T E  +L+
Sbjct: 377 ILPQDLPPELFKDPVVHHAGAVVAGDWESALRDIVDRRLGEGESDLLADMQPTFERIMLE 436

Query: 554 -TYQATQGNISQTSRLLGLSRNTIYRKLKAL 583
              + TQG+  + +R LG  RNT+ RKLK L
Sbjct: 437 VALKHTQGHKQEAARRLGWGRNTLTRKLKEL 467