Pairwise Alignments

Query, 587 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 504 a.a., response regulator receiver protein (RefSeq) from Shewanella amazonensis SB2B

 Score =  186 bits (472), Expect = 2e-51
 Identities = 120/335 (35%), Positives = 179/335 (53%), Gaps = 23/335 (6%)

Query: 268 KQHRTRALTPAS--DLHFGDAEVERCWQQANRVIDKDIRLLILGQTGVGKNEFVKALHKN 325
           K  RT  +  A+   L FG   +ERC   A ++   D+ +LI G  G GK+     LH N
Sbjct: 167 KAERTAVIHEANLCGLVFGSTAMERCVDLALQLAKSDVSVLITGPNGAGKDRLADILHAN 226

Query: 326 SQRKNGPLVAVNCGALAKELVEAELFGYVAGAFTGASHKGYQGKVRLADKGILFLDEIAD 385
           S  K+ P + VN GAL  EL+EAELFG  AGAFTGA+ K   G+   A+ G LFLDEI +
Sbjct: 227 SPLKDKPFIKVNVGALPMELMEAELFGAEAGAFTGAT-KSRIGRFEAANGGTLFLDEIGN 285

Query: 386 LPLDAQSRLLHVLQDKTVLPVGSNHATKVDIQIIAATHKNLEQLVTQGLFRQDLYYRLSD 445
           LPL  Q +LL VLQ      +GS+   K  +++++AT+ +L Q +  G FR+DL+YRL+ 
Sbjct: 286 LPLSGQVKLLRVLQTGEFERLGSHQTRKCKVRVLSATNADLRQDIQTGRFREDLFYRLNV 345

Query: 446 LVVELPSF-QQRQDRQALIHHIHRRYSDAGQQICGDLMQRLLAYHWPGNLRELDSLIKVA 504
           + + LP   ++R D   L+ H  R     G+ +       LLA+ WPGN+REL++  K A
Sbjct: 346 VELALPPLCERRDDVLPLVQHFTR-----GRALDASAKAALLAHSWPGNVRELENACKRA 400

Query: 505 SLMAEGE--GVLTFNHLPTHLAQ-----------KLSHAAPTATEDDQQKDIKSTVEASL 551
            ++A GE    + F  +PT   Q           +  H  P  T   + + + +    S 
Sbjct: 401 DILARGEMLSAVDFGLMPTQTPQPAVNQSGISSNEAHHNEPFNTLLPESEPVNTAPNRSE 460

Query: 552 LK-TYQATQGNISQTSRLLGLSRNTIYRKLKALGI 585
           ++    A  G I++ ++  GLSR  +YR+++  GI
Sbjct: 461 IEAAITAHNGVIARVAKSFGLSRQALYRRMEKFGI 495