Pairwise Alignments

Query, 587 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 653 a.a., Sigma54 Specific Transcriptional Regulator containing GAF, and Fis DNA-binding domains (NCBI) from Rhodospirillum rubrum S1H

 Score =  326 bits (835), Expect = 2e-93
 Identities = 221/610 (36%), Positives = 331/610 (54%), Gaps = 52/610 (8%)

Query: 13  LVNSWQRSEQAGLTQQSR-AQDIRLSDNKLK---ERRQELAGLIDTVSRFALPLFYQLFA 68
           + +SW+RS +AGL   S  A    L+   L    ERR+EL          A P+   L A
Sbjct: 34  VAHSWERSLRAGLLPFSPPAVADHLAARHLAQAVERRRELL-------MRARPVMDYLHA 86

Query: 69  H---SDSRLILTDQHGVIIGSWGQARFREKLSQIALSSGACWQEPIKGTNAIGTALIEQK 125
               SDS +IL D +GV+I + G A F E+  ++AL  GA W E  +GTNAIGTAL+E +
Sbjct: 87  QTKGSDSVVILADDNGVLIEALGDAAFVERAERVALKPGASWHERHRGTNAIGTALVEAQ 146

Query: 126 PISVIGEQHFIQHHHFISCSASPIFDYTGQLIGVLDITSEQQKHTLSTQVVVQNMVQLVE 185
           P++V G +HF +H+ F++C+A+PI    G+++GVLDI+  Q+     T  +V+    ++E
Sbjct: 147 PVAVHGGEHFFEHNRFLTCAAAPIAGPDGRVLGVLDISGPQRGRHPHTFGLVRAATHMIE 206

Query: 186 NQLLNQIPHGHVRIDLACEPSLLSSGWQGVIIADESGQILAHNQVAGQLLA-QGRVIGQS 244
           N+L      G  RI    +   + +  +G++   E G ++  N+ A   LA     IG++
Sbjct: 207 NKLFEARHEGEYRIRFHPQADGIGTLAEGMVALSEEGLVIGANRAALAFLAITPSDIGKA 266

Query: 245 -VEQVLP------------RPQTHAS--------FIYTTTPLHSKQHRTRALTPA----- 278
            +E +LP             P T           F     P      R  A+ PA     
Sbjct: 267 LIEALLPLRMADILDHGHRHPGTTLGLACPGGGRFSLRVEPGWRAVVRPAAM-PAPDRVQ 325

Query: 279 ---SDLHFGDAEVERCWQQANRVIDKDIRLLILGQTGVGKNEFVKALHKNSQRKNGPLVA 335
              +DL  GD  +    ++  +++ K I LL+ G++GVGK  F  ALH    R+  P VA
Sbjct: 326 DALADLDTGDPTMAGAIERVRKILGKPIPLLLQGESGVGKEVFATALHATGPRRGRPFVA 385

Query: 336 VNCGALAKELVEAELFGYVAGAFTGASHKGYQGKVRLADKGILFLDEIADLPLDAQSRLL 395
           VNC AL + L+EAELFGY  GAFTGA  +G  G++R A+ G LFLDEI D+PL  Q RLL
Sbjct: 386 VNCAALPEHLIEAELFGYAPGAFTGARREGSAGRIREAEGGTLFLDEIGDMPLALQCRLL 445

Query: 396 HVLQDKTVLPVGSNHATKVDIQIIAATHKNLEQLVTQGLFRQDLYYRLSDLVVELPSFQQ 455
            VLQD+ V+P+G   A  VD  +IAA+H+ L+     G FR DLYYRL+ L + LP  + 
Sbjct: 446 RVLQDRQVVPLGGGKAVSVDFALIAASHRPLKAEAEAGRFRADLYYRLNGLTLCLPPLRA 505

Query: 456 RQDRQALI-HHIHRRYSDAGQQICGDLMQRLLAYHWPGNLRELDSLIKVA-SLMAEGEGV 513
           R+D  AL+   I      AG  +  D+   L  + WPGNLR+L ++++ A +L   GE  
Sbjct: 506 RRDFAALVARMIETMEPGAGIGLDPDVADALAGHGWPGNLRQLANVLRFACALRDPGEIR 565

Query: 514 LTFNHLPTHLAQKLSHAAPTATEDDQ---QKDIKSTVEASLLKTYQATQGNISQTSRLLG 570
           L ++HLP  L ++L    P+  + D       +++  ++ + +   A+ GN+S+ +R LG
Sbjct: 566 LGWHHLPEDLIEEL--RCPSGVDTDAGAGPATLRAASDSLIERMVAASGGNLSEAARRLG 623

Query: 571 LSRNTIYRKL 580
           +SRNT+YR++
Sbjct: 624 ISRNTLYRRM 633