Pairwise Alignments

Query, 587 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 629 a.a., sigma-54-dependent Fis family transcriptional regulator from Rhodopseudomonas palustris CGA009

 Score =  297 bits (761), Expect = 8e-85
 Identities = 198/597 (33%), Positives = 300/597 (50%), Gaps = 36/597 (6%)

Query: 13  LVNSWQRSEQAGLTQQSRAQDIRLSDNKLKERRQELAGLIDTVSRFALPLFYQLFAHSDS 72
           ++ SWQR    GL     A    L +       +E     D + R A P    L    D+
Sbjct: 32  ILRSWQRCAGQGLD----ASRSPLVEPPTARELREFQERHDRLGRLARPELNAL--QGDA 85

Query: 73  RL-----ILTDQHGVIIGSWGQARFREKLSQIALSSGACWQEPIKGTNAIGTALIEQKPI 127
           RL     ILTD  GV++   G   F  + +Q+AL  G  W E   GTNAIGTAL+E++PI
Sbjct: 86  RLTGSVVILTDAAGVVLDMIGSDEFAGRAAQVALRPGVSWSEADTGTNAIGTALVERQPI 145

Query: 128 SVIGEQHFIQHHHFISCSASPIFDYTGQLIGVLDITSEQQKHTLSTQVVVQNMVQLVENQ 187
           +V G +HF + H  ++C+A+P+ D  G + G LD+T       +    +++   + +E++
Sbjct: 146 AVHGAEHFFERHRILACAAAPLIDPRGVVAGALDMTGPAAIRHVHALGLMRLAAEQIEHR 205

Query: 188 LLNQIPHGHVRIDLACEPSLLSSGWQGVIIADESGQILAHNQVAGQL---------LAQG 238
              +       + L  + +LL +  +GV +A   G ++  N+    L         LA+ 
Sbjct: 206 FFTEGFEHCTMLRLHTDRALLGTPREGV-LAFADGVLVGANRHGLDLMNLDWPALDLARL 264

Query: 239 RVIGQSVE-----QVLPRPQTHASFIYTTTPLHSKQHRTRA-------LTPASDLH-FGD 285
             +   V      Q+L  P+    +     PL        A         PA ++    D
Sbjct: 265 ETLLPGVRPSDQIQMLRGPRGTRLWGRLVDPLRRSPRAPAASMPAAVPAAPAGEVEPILD 324

Query: 286 AEVERCWQQANRVIDKDIRLLILGQTGVGKNEFVKALHKNSQRKNGPLVAVNCGALAKEL 345
           AE+     +  R+++  I +L+LG+TG GK+ F + +H  S R+N P V VNC AL + L
Sbjct: 325 AEMMAQLSRTVRLVEAGIPVLLLGETGSGKDVFARRVHAESARRNKPFVPVNCAALPEGL 384

Query: 346 VEAELFGYVAGAFTGASHKGYQGKVRLADKGILFLDEIADLPLDAQSRLLHVLQDKTVLP 405
           +E+ELFGY AGAFTGA  +G  G +R AD G+LFLDEI D+PL  QSRLL VLQDK + P
Sbjct: 385 IESELFGYEAGAFTGARRQGAPGLLRQADGGVLFLDEIGDMPLSLQSRLLRVLQDKQISP 444

Query: 406 VGSNHATKVDIQIIAATHKNLEQLVTQGLFRQDLYYRLSDLVVELPSFQQRQDRQALIHH 465
           +G      VD  +I ATH+ L  L+  G FRQDLY+R++  VVE P  +   DR AL+  
Sbjct: 445 LGGGRPVPVDFALICATHQPLGTLLAAGAFRQDLYFRIAQYVVERPPVRHHPDRLALVRT 504

Query: 466 IHRRY--SDAGQQICGDLMQRLLAYHWPGNLRELDSLIKVASLMAEGEGVLTFNHLPTHL 523
           + R+    DAG Q+  ++ + L AY+WPGN R+L   ++   ++ E    +    LP  +
Sbjct: 505 LWRQLGGEDAGVQLSAEVERVLAAYNWPGNYRQLVGTLRALLVLGEPGHPVEVAALPAEI 564

Query: 524 AQKLSHAAPTATEDDQQKDIKSTVEASLLKTYQATQGNISQTSRLLGLSRNTIYRKL 580
                      +E      +     + L     A+ GN+S+ +R LG+ R+T YR+L
Sbjct: 565 TAAAGAVESQVSEMLPGTSLAEQTRSVLQAALDASGGNVSRAARRLGIDRSTYYRRL 621