Pairwise Alignments

Query, 587 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 635 a.a., sigma-54-dependent Fis family transcriptional regulator from Pseudomonas fluorescens SBW25-INTG

 Score =  303 bits (776), Expect = 1e-86
 Identities = 207/612 (33%), Positives = 327/612 (53%), Gaps = 45/612 (7%)

Query: 13  LVNSWQRS-EQAGLTQQSRAQDIRLSDNKLKERRQELAGLIDTVSRFALPLFYQLFAHSD 71
           +  SW R  E   L          L   +L E R+ L  ++  ++   +   +Q  + + 
Sbjct: 28  IARSWLRCLEDYHLDPAQTIAPTVLEHGRLLESRERLQQVLH-IAGSEMNSLHQQLSGAG 86

Query: 72  SRLILTDQHGVIIGSWGQARFREKLSQIALSSGACWQEPIKGTNAIGTALIEQKPISVIG 131
             ++LTD  GVI+        R+   +  L  GA W E  +GTN IGT L+E++ +++  
Sbjct: 87  HAVLLTDARGVILNCVTAPSERKIFERAGLWLGADWSEACEGTNGIGTCLVERQSLTIHR 146

Query: 132 EQHFIQHHHFISCSASPIFDYTGQLIGVLDITSEQQKHTLSTQVVVQNMVQLVENQL--- 188
           ++HF   H  ++CSASP+FD  G L+ VLD++S ++  +  +Q     +V L    +   
Sbjct: 147 DEHFRGRHTGLTCSASPVFDPHGDLLAVLDVSSAREAVSRQSQFHTMALVNLSAKMIESC 206

Query: 189 --LNQIPHGHV-RIDLACEPSLLSSGWQGVIIADESGQILAHNQVAGQLLAQ--GRVIGQ 243
             L    H  + R  L  E   L S  +G++  D +G+I A NQ A  LL Q  G ++GQ
Sbjct: 207 YFLRHFEHHWLLRFHLQAESVGLFS--EGLLAFDGNGRICAVNQSALNLLGQLRGGLLGQ 264

Query: 244 SVE--------QVLPRPQTHASFIYTTT-----PLHSKQHRTRALTPAS----------- 279
            VE        Q+L R   +A+  +        PL +         PA            
Sbjct: 265 PVEAFFECSLDQLLGRASANATASWPLRTRDGRPLFAALRGQARSVPAPVARPAVVERPR 324

Query: 280 --DLHFGDAEVERCWQQANRVIDKDIRLLILGQTGVGKNEFVKALHKNSQRKNGPLVAVN 337
              +  GD  ++R + +A RV ++D+ LLI G+TG GK  F KA+H+ SQR +   VA+N
Sbjct: 325 LPGICLGDPALQRDFSKALRVFERDVPLLINGETGSGKEAFAKAVHQASQRADKAFVALN 384

Query: 338 CGALAKELVEAELFGYVAGAFTGASHKGYQGKVRLADKGILFLDEIADLPLDAQSRLLHV 397
           C A+ + L+E+ELFGY  G+FTGA  +G QGK++ AD G LFLDEI D+PL  Q+RLL V
Sbjct: 385 CAAIPESLIESELFGYRGGSFTGARKEGMQGKLQQADGGTLFLDEIGDMPLALQTRLLRV 444

Query: 398 LQDKTVLPVGSNHATKVDIQIIAATHKNLEQLVTQGLFRQDLYYRLSDLVVELPSFQQRQ 457
           L+D+ V+P+G      V+++II+ATH+NL + V  G FR+DLYYRL+ L V LP+ ++R 
Sbjct: 445 LEDRLVVPLG-GEPQAVNVRIISATHRNLLERVQDGSFREDLYYRLNGLEVGLPALRERS 503

Query: 458 DRQALIHHIHRRYSDAGQQICGDLMQR--LLAYHWPGNLRELDSLIKVASLMAEGEGVLT 515
           D+  L+  +  + ++ G+ +  D   R  LLA+ WPGN+R+L ++++    + + EG + 
Sbjct: 504 DKSQLLDFLLAQEAN-GEAVALDPAARMALLAFAWPGNVRQLRTVLRTLVALCD-EGRVA 561

Query: 516 FNHLPTHLAQKLSHAAPTATEDDQQKDIKSTVEASLLKTYQATQGNISQTSRLLGLSRNT 575
              LP  + Q    AA  A     +  ++     +LL   Q  + +++ T+  LG+SRNT
Sbjct: 562 LEDLPAQIRQARPVAAAQAR--PAESPLEDAERLALLTALQQQRWHMTHTAEQLGVSRNT 619

Query: 576 IYRKLKALGILK 587
           +YRKL+  GI +
Sbjct: 620 LYRKLRRHGIAR 631