Pairwise Alignments

Query, 587 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 591 a.a., Fis family GAF modulated sigma54 specific transcriptional regulator (RefSeq) from Shewanella loihica PV-4

 Score =  564 bits (1453), Expect = e-165
 Identities = 287/583 (49%), Positives = 401/583 (68%), Gaps = 12/583 (2%)

Query: 12  WLVNSWQRSEQAGLTQQSRAQDIRLSDNKLKERRQELAGLIDTVSRFALPLFYQLFAHSD 71
           WL +SW RS+ AGL++    Q++RL+   L ER      LI+   + ALPLF Q+ AHS 
Sbjct: 10  WLSDSWSRSQGAGLSEAKLPQELRLNAEALAERHHANKQLINLTKQHALPLFNQMMAHSQ 69

Query: 72  SRLILTDQHGVIIGSWGQARFREKLSQIALSSGACWQEPIKGTNAIGTALIEQKPISVIG 131
           SRLIL+D+ G ++  WG +R+ +KL+ +AL  G  W+E  KGTNAIGTAL  ++ ++VIG
Sbjct: 70  SRLILSDRDGYVLCHWGVSRYSDKLANVALDVGVNWREEHKGTNAIGTALTARQTVAVIG 129

Query: 132 EQHFIQHHHFISCSASPIFDYTGQLIGVLDITSEQQKHTLSTQVVVQNMVQLVENQLLNQ 191
           EQHFI+HH F+SC+ASPIF   G+L+G +DITSEQQ+HT  T V++ ++VQ +E  LL  
Sbjct: 130 EQHFIRHHRFMSCTASPIFSPEGELLGAIDITSEQQRHTQQTLVLIASLVQQIETALLCH 189

Query: 192 IPHGHVRIDLACEPSLLSSGWQGVIIADESGQILAHNQVAGQLLAQGRVIGQSVEQVLPR 251
           +P  H RIDLA +PSL++SGWQG+++A+  G++L  N +A +LL + R IG  +++ L  
Sbjct: 190 LPGSHYRIDLAEQPSLITSGWQGIVVANVDGKLLGCNAMAKRLLHRPR-IGDDIDRHLGA 248

Query: 252 PQTHASFIYTTTPLHSKQHRTRALTPAS------DLHFGDAEVERCWQQANRVIDKDIRL 305
                  +     LH K  +     P+        + F D ++ER WQQAN+V+ ++I L
Sbjct: 249 SWNSGEQVCQDQRLHLKTQQLVETRPSQLVSQQIGVRFRDPKLERAWQQANKVVGRNIPL 308

Query: 306 LILGQTGVGKNEFVKALHKNSQRKNGPLVAVNCGALAKELVEAELFGYVAGAFTGASHKG 365
           LI G+TGVGK +FVK LH  S R   PLVAVNC AL  ELVE+ELFGY AGAFTGAS +G
Sbjct: 309 LICGETGVGKEQFVKKLHGQSTRAQRPLVAVNCAALPAELVESELFGYQAGAFTGASRQG 368

Query: 366 YQGKVRLADKGILFLDEIADLPLDAQSRLLHVLQDKTVLPVGSNHATKVDIQIIAATHKN 425
           ++GK+R AD G LFLDEI ++PL  QSRLL VLQ++ V+PVG N + KVDIQ++AATH +
Sbjct: 369 FEGKIRQADGGFLFLDEIGEMPLATQSRLLRVLQEREVVPVGGNRSYKVDIQVVAATHAD 428

Query: 426 LEQLVTQGLFRQDLYYRLSDLVVELPSFQQRQDRQALIHHIHRRYSDAGQQICGDLMQRL 485
           L QLV++G FR+DLYYRL+ L V LP  +QR D + +IH +HRRY  A QQ+C  L++RL
Sbjct: 429 LRQLVSEGAFREDLYYRLNGLQVSLPPLRQRADIERIIHKLHRRYRQAPQQLCPQLLRRL 488

Query: 486 LAYHWPGNLRELDSLIKVASLMAEGEGVLTFNHLPTHLAQKLSHAAPTATEDDQ---QKD 542
           LA+ WPGNLRELD+L++VA LMA+G+  L + HLP  L  +L    P    +     + +
Sbjct: 489 LAHDWPGNLRELDNLMQVACLMADGDPELNWQHLPDTLQAQLQ--GPEQAGEQMAACESE 546

Query: 543 IKSTVEASLLKTYQATQGNISQTSRLLGLSRNTIYRKLKALGI 585
           +   V A+++ ++   +GN+S+ ++ LG+SRNT+YRKLKALG+
Sbjct: 547 LSLMVNANIVSSFHRFEGNVSRCAKHLGISRNTLYRKLKALGL 589