Pairwise Alignments

Query, 587 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 469 a.a., nitrogen metabolism transcriptional regulator, NtrC, Fis family (RefSeq) from Shewanella loihica PV-4

 Score =  189 bits (479), Expect = 3e-52
 Identities = 122/322 (37%), Positives = 180/322 (55%), Gaps = 27/322 (8%)

Query: 288 VERCWQQANRVIDKDIRLLILGQTGVGKNEFVKALHKNSQRKNGPLVAVNCGALAKELVE 347
           ++  ++   R+    I +LI GQ+G GK     ALHK+S RK+ P +A+N  A+ KEL+E
Sbjct: 146 MQEVFRAIGRLSRSSISVLINGQSGTGKELVAGALHKHSPRKDKPFIALNMAAIPKELIE 205

Query: 348 AELFGYVAGAFTGASHKGYQGKVRLADKGILFLDEIADLPLDAQSRLLHVLQDKTVLPVG 407
           +ELFG+  GAFTGA++   QG+   AD G LFLDEI D+PLD Q+RLL VL D     +G
Sbjct: 206 SELFGHEKGAFTGAANVR-QGRFEQADGGTLFLDEIGDMPLDVQTRLLRVLADGQFYRIG 264

Query: 408 SNHATKVDIQIIAATHKNLEQLVTQGLFRQDLYYRLSDLVVELPSF-QQRQDRQALIHHI 466
            +   +VD++IIAATH+NLE LV +G FR+DL++RL+ + V LP   Q+R+D   L  H 
Sbjct: 265 GHSPVQVDVRIIAATHQNLESLVAKGDFREDLFHRLNVIRVHLPPLSQRREDIPQLARHF 324

Query: 467 ----HRRYSDAGQQICGDLMQRLLAYHWPGNLRELDSLIKVASLMAEGEGVLTFNHLPTH 522
                +  S   + +       L +  WPGN+R+L++  +   +MA G+ +L  +  P  
Sbjct: 325 LATAAKEISVEPKILTKATADTLASLPWPGNVRQLENTCRWLMVMASGQEILPQDLPPEL 384

Query: 523 LAQKLSH-AAPTA-------------------TEDDQQKDIKSTVEASLLKT-YQATQGN 561
           L    SH ++P A                    E D    I+   E  LL+T  + T+G+
Sbjct: 385 LTPSNSHDSSPQAGSGGWQEALTQWIDQRLSEGESDLLTQIQPAFEKILLETALKHTKGH 444

Query: 562 ISQTSRLLGLSRNTIYRKLKAL 583
             + ++ LG  RNT+ RKLK L
Sbjct: 445 KQEAAKRLGWGRNTLTRKLKEL 466