Pairwise Alignments

Query, 587 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 474 a.a., PAS modulated sigma54 specific transcriptional regulator, Fis family (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score =  218 bits (554), Expect = 6e-61
 Identities = 119/288 (41%), Positives = 172/288 (59%), Gaps = 4/288 (1%)

Query: 302 DIRLLILGQTGVGKNEFVKALHKNSQRKNGPLVAVNCGALAKELVEAELFGYVAGAFTGA 361
           D  +L+LG TG GK     ALH  S R  GPLV++NC A+ K+L E+ELFGYV GAF+GA
Sbjct: 176 DAPVLVLGATGTGKELAAHALHAESTRAAGPLVSINCAAIPKDLFESELFGYVRGAFSGA 235

Query: 362 SHKGYQGKVRLADKGILFLDEIADLPLDAQSRLLHVLQDKTVLPVGSNHATKVDIQIIAA 421
            H G  G++ LAD G LFLDEI D+PL AQ++LL VL+ +T+  VG+  A  VD ++IAA
Sbjct: 236 HHSGKMGQIELADGGTLFLDEIGDMPLQAQAKLLRVLESRTICRVGAVTAEPVDFRLIAA 295

Query: 422 THKNLEQLVTQGLFRQDLYYRLSDLVVELPSFQQR-QDRQALIHHIHRRYSDAGQQICGD 480
           T++N++ +V  G FR+DLYYR++  ++E+PS + R +D   L HH   R    G      
Sbjct: 296 TNRNIKDMVQAGTFREDLYYRINTFIIEIPSLRDRKEDILPLAHHFLARMGHEGVTFTPA 355

Query: 481 LMQRLLAYHWPGNLRELDSLIKVASLMAEGEGVLTFNHLPTHLAQKLSHAAPTATEDDQQ 540
            +  L ++ WPGN+R+L + I  A+ M EG  +      P       S  AP     D+ 
Sbjct: 356 AVSALQSFEWPGNIRQLHNAILHAATMREGSAIDVCALPPEIRPVHTSPVAPCPLPQDRS 415

Query: 541 --KDIKSTVEASLLKTYQATQ-GNISQTSRLLGLSRNTIYRKLKALGI 585
               I +  EA+L++     Q GN+++ +  LG+SR T+Y K+K  G+
Sbjct: 416 DLAGILAHNEAALIENALREQGGNVTRAASALGVSRATLYEKMKKHGV 463