Pairwise Alignments

Query, 587 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 456 a.a., two component, sigma54 specific, transcriptional regulator, Fis family (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score =  193 bits (491), Expect = 1e-53
 Identities = 110/288 (38%), Positives = 176/288 (61%), Gaps = 8/288 (2%)

Query: 298 VIDKDIRLLILGQTGVGKNEFVKALHKNSQRKNGPLVAVNCGALAKELVEAELFGYVAGA 357
           +   +  +L+ G++G GK    +A+H NSQR++GP V VNC AL + L+E+ELFG+  GA
Sbjct: 164 IAPSEATVLVTGESGTGKELIARAIHANSQRRHGPYVTVNCAALTETLLESELFGHEKGA 223

Query: 358 FTGASHKGYQGKVRLADKGILFLDEIADLPLDAQSRLLHVLQDKTVLPVGSNHATKVDIQ 417
           FTGA  K  +G+ + ADKG +FLDEI +  L  Q++LL  +Q++ +  VGS+   +VD++
Sbjct: 224 FTGAE-KRREGRFQSADKGTIFLDEIGETSLPMQAKLLRAIQEREIQRVGSDQTLRVDVR 282

Query: 418 IIAATHKNLEQLVTQGLFRQDLYYRLSDLVVELPSFQQR-QDRQALIHHIHRRYSDA-GQ 475
           IIAAT+++L   V  G FRQDLYYRL+ + + +P  ++R +D   L  H  RR+++  G+
Sbjct: 283 IIAATNRDLRAEVEAGRFRQDLYYRLNVVTLHVPPLRERVEDIPLLAGHFLRRFTEKNGK 342

Query: 476 QICG---DLMQRLLAYHWPGNLRELDSLIKVASLMAEGEGVLTFNHLPTHLAQKLSHAAP 532
           ++ G     M RLL + WPGN+REL++  + A ++  GE  ++   LP H        A 
Sbjct: 343 RVKGFTPQAMDRLLKHDWPGNVRELENAAERAVVLLVGE-YISERELP-HAIAGGDGDAT 400

Query: 533 TATEDDQQKDIKSTVEASLLKTYQATQGNISQTSRLLGLSRNTIYRKL 580
            A        ++    A++L    A++GN S+ +R LG++R T++ KL
Sbjct: 401 CAVPRFNGMTLEEIERAAILDAMDASEGNKSEAARRLGITRKTLHAKL 448