Pairwise Alignments

Query, 587 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 470 a.a., protein containing RNA polymerase sigma factor 54, interaction / helix-turn-helix, Fis-type from Marinobacter adhaerens HP15

 Score =  191 bits (485), Expect = 6e-53
 Identities = 108/299 (36%), Positives = 173/299 (57%), Gaps = 9/299 (3%)

Query: 293 QQANRVIDKDIRLLILGQTGVGKNEFVKALHKNSQRKNGPLVAVNCGALAKELVEAELFG 352
           ++A     +D+ +L+LG+TG GK    +A+H  S R   P V VN  A+   L+EAE FG
Sbjct: 172 RRARLAAGRDMPVLLLGETGTGKEVLAQAIHTVSGRAEKPFVGVNVAAIPDNLLEAEFFG 231

Query: 353 YVAGAFTGASHKGYQGKVRLADKGILFLDEIADLPLDAQSRLLHVLQDKTVLPVGSNHAT 412
              GA+TGA  +  +GK +LA+ G LFLDE+ D+PL  Q++LL  LQ+  + P+GSN   
Sbjct: 232 VAPGAYTGADRRTREGKFQLANGGTLFLDEVGDMPLPLQAKLLRALQEGEIEPLGSNKVV 291

Query: 413 KVDIQIIAATHKNLEQLVTQGLFRQDLYYRLSDLVVELPSFQQRQDRQALIHHIHRRYSD 472
            VD+++IAAT +NLE ++++G FR DLYYRL+ L + +P  + R     ++         
Sbjct: 292 SVDVRVIAATSRNLEVMISEGTFRSDLYYRLNVLEIPIPPLRDRLADLGVLCEALLEEIC 351

Query: 473 AGQQICGDL----MQRLLAYHWPGNLRELDSLIKVASLMAEGEGVL----TFNHLPTHLA 524
            G ++ G++    +  L +Y WPGN+REL ++++ A  M E  G+L     F  LP    
Sbjct: 352 EGLELRGEITDAGVSALGSYDWPGNIRELRNVLERAMTMGEEGGLLDADAIFKVLPRAGT 411

Query: 525 QKLSHAAPTATEDDQQKDIKSTVEASLLKTYQATQGNISQTSRLLGLSRNTIYRKLKAL 583
           + +S  AP       Q   ++  +A + +   A++GN ++ ++LLG+SR+ +Y KL  L
Sbjct: 412 RPVSSLAPQPVRPLSQTLAEAEAQA-IEEALVASRGNRTRAAKLLGISRSVLYEKLAKL 469