Pairwise Alignments

Query, 587 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 626 a.a., sigma-54 dependent transcriptional regulator from Marinobacter adhaerens HP15

 Score =  376 bits (965), Expect = e-108
 Identities = 229/618 (37%), Positives = 347/618 (56%), Gaps = 50/618 (8%)

Query: 13  LVNSWQRSEQAGLTQQSRAQDIRLSDNKLKERRQELAGLIDTVSRFALPLFYQLFAHSDS 72
           + +SW R    GL        ++    +L+E  ++ + L+       LP +  + ++S  
Sbjct: 13  IADSWNRCIAWGLDHDHEPAPLKPEPARLEEINRQHSELLSVTEAEVLPYYRNVLSNSRC 72

Query: 73  RLILTDQHGVIIGSWGQARFREKLSQIALSSGACWQEPIKGTNAIGTALIEQKPISVIGE 132
            ++L DQH  ++ SWG  R  E   +    +GA WQE   GTNAIGT++    P+ +   
Sbjct: 73  LILLADQHATVLSSWGDERITETRLKPWFQTGANWQEQNCGTNAIGTSIAVGGPVQIQRN 132

Query: 133 QHFIQHHHFISCSASPIFDYTGQLIGVLDITSEQ---QKHTLSTQVVVQNMVQLVENQLL 189
           +HF++ +  I  SA+PIFD   Q+ GVL + S+    Q HTL    +V+ + Q VEN+L+
Sbjct: 133 EHFLKTNRSIIGSAAPIFDAHRQIAGVLSVFSDAYLPQAHTLG---MVRLLSQSVENRLI 189

Query: 190 N-QIPHGHVRIDLACEPSLLSSGWQGVIIADESGQILAHNQVAGQLLAQGRVIGQSVE-- 246
           N Q    H +I L        S W G+++ D+SGQ++A NQ A QLL    V  +  E  
Sbjct: 190 NRQFGPDHFQITLNTTADNFDSPWSGILVCDDSGQVIASNQRADQLLGMNTVEARLDELF 249

Query: 247 -----QVLPRPQTHASFIYTTTP--LHSKQHRTRALTPAS-------------------- 279
                 +L  P+T    + T +   L ++  R   +  A+                    
Sbjct: 250 TRHRNHILGHPETETLQLTTRSKVRLSARIKRPTRIPDANGKTKPSPVPEDLRQSARPLD 309

Query: 280 --DLHFGDAEVERCWQQANRVIDKDIRLLILGQTGVGKNEFVKALHKNSQRKNGPLVAVN 337
             +L +GD+ V+RC  Q+ +V+++ + +LI G+TGVGK   VKALH+ S RK+ PLVAVN
Sbjct: 310 IDNLDYGDSAVKRCATQSLKVLERGLPVLITGETGVGKEVLVKALHRASHRKDQPLVAVN 369

Query: 338 CGALAKELVEAELFGYVAGAFTGASHKGYQGKVRLADKGILFLDEIADLPLDAQSRLLHV 397
           C A+  ELVE+ELFGY AGAFTGA  +G  G +R A KG+LFLDEI ++PL AQSRLL V
Sbjct: 370 CAAIPPELVESELFGYEAGAFTGARAQGSLGFIRKAHKGVLFLDEIGEMPLSAQSRLLRV 429

Query: 398 LQDKTVLPVGSNHATKVDIQIIAATHKNLEQLVTQGLFRQDLYYRLSDLVVELPSFQQRQ 457
           LQ++ V PVGS  +  VDI ++ AT++ L   +  G FR DLYYR++ L VELP+ + R 
Sbjct: 430 LQERVVTPVGSTDSVPVDILLVTATNRPLTTRIENGHFRADLYYRINGLCVELPALRNRA 489

Query: 458 DRQALIHHIHRRYSDAGQ--QICGDLMQRLLAYHWPGNLRELDSLIKVASLMAEGEGVLT 515
           DR+ LI  ++ R+ D GQ  Q+   ++  L A+ WPGN+R+L ++++VA  +A+GE V  
Sbjct: 490 DRRMLIQSLYARHRDPGQSEQLSPKVLSALEAHPWPGNIRQLVNVLRVAIAIADGEQVQV 549

Query: 516 FNHLPTHL-----AQKLSHAAPTATED---DQQKDIKSTVEASLLKTYQATQGNISQTSR 567
           + HLP        A  L  + P   E      + + + T+ A  L+ Y+   GNISQ +R
Sbjct: 550 W-HLPEDFLAEFEANPLEQSDPPMQEQPVAGSEAETEDTL-ARTLQIYRKCTGNISQAAR 607

Query: 568 LLGLSRNTIYRKLKALGI 585
            L +SRNT+Y++L+ +G+
Sbjct: 608 ELSISRNTLYKRLREMGV 625