Pairwise Alignments

Query, 587 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 440 a.a., two component, sigma54 specific, transcriptional regulator, Fis family from Marinobacter adhaerens HP15

 Score =  191 bits (484), Expect = 7e-53
 Identities = 110/290 (37%), Positives = 174/290 (60%), Gaps = 20/290 (6%)

Query: 297 RVIDKDIRLLILGQTGVGKNEFVKALHKNSQRKNGPLVAVNCGALAKELVEAELFGYVAG 356
           ++   D+  LI G+TG GK    +ALH  S R + P  A+NC A+ + L+E+ELFGY  G
Sbjct: 145 KIAPTDVTTLINGETGTGKELLARALHDLSPRASKPFAAINCAAIPEALLESELFGYEKG 204

Query: 357 AFTGASHKGYQGKVRLADKGILFLDEIADLPLDAQSRLLHVLQDKTVLPVGSNHATKVDI 416
           AFTGA+ +  +GK+  A+ G LFLDEI D+P   Q++LL  LQ++ +  VG+     VD+
Sbjct: 205 AFTGAT-QNKKGKIESANGGTLFLDEIGDMPFALQAKLLRFLQERMIDRVGAIEPISVDV 263

Query: 417 QIIAATHKNLEQLVTQGLFRQDLYYRLSDLVVELPSFQQRQD-----RQALIHHIHRRYS 471
           ++I ATH+NL QL+  G FR+DLYYR+S++ +++P+ + R        Q+L+  I +   
Sbjct: 264 RVICATHRNLNQLIEGGEFREDLYYRISEITLDVPALRDRDGDALVLAQSLLKSIGKELD 323

Query: 472 DAGQQICGDLMQRLLAYHWPGNLRELDSLIKVASLMAEGEGVLTFNHLPTHLAQKLSHAA 531
                   D +  +  Y WPGN+RE+ + +K A +MAEG+ V          A+ LS  A
Sbjct: 324 RPNLSFAEDAISAVNNYPWPGNVREMINKVKRAIIMAEGKRV---------TAEDLSLQA 374

Query: 532 PTATEDDQ---QKDIKSTVE-ASLLKTYQATQGNISQTSRLLGLSRNTIY 577
            T+T+D++    + I+ T E  +L +  Q +  N+++ +RLLG++R TIY
Sbjct: 375 -TSTQDEKCLNLRQIRETAERRALNQALQVSGFNMARAARLLGITRPTIY 423