Pairwise Alignments

Query, 587 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 616 a.a., sigma-54 dependent transcriptional regulator (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  570 bits (1468), Expect = e-167
 Identities = 305/604 (50%), Positives = 404/604 (66%), Gaps = 32/604 (5%)

Query: 12  WLVNSWQRSEQAGLTQQSRAQDIRLSDNKLKERRQELAGLIDTVSRFALPLFYQLFAHSD 71
           WL +SWQRS  AGL++   A D+RLS   LK + ++   LI+ V   ALPLF QL A S+
Sbjct: 13  WLADSWQRSIGAGLSEFHAADDLRLSHADLKHKHEQYQQLIELVQSHALPLFNQLMAQSN 72

Query: 72  SRLILTDQHGVIIGSWGQARFREKLSQIALSSGACWQEPIKGTNAIGTALIEQKPISVIG 131
           SRL+L+D  G ++  WG +R+  KL+ +AL  G  W E  KGTNAIGTAL+ ++ +SV+G
Sbjct: 73  SRLLLSDADGYVLKHWGVSRYSSKLADVALDIGVNWLEQYKGTNAIGTALMAKQAVSVVG 132

Query: 132 EQHFIQHHHFISCSASPIFDYTGQLIGVLDITSEQQKHTLSTQVVVQNMVQLVENQLLNQ 191
           EQHFI+ + F+SC+A PIF   G+++GVLDITSEQQ+H+  T ++V ++ Q VE  LL  
Sbjct: 133 EQHFIRQNRFMSCTACPIFSPQGEMLGVLDITSEQQRHSQQTLMLVSSLAQQVETALLCH 192

Query: 192 IPHGHVRIDLACEPSLLSSGWQGVIIADESGQILAHNQVAGQLLAQGRVIGQSVEQVLPR 251
           +P  H RIDLA EPSLLSSGWQG++IAD  G+I+  N +A QLL+Q + +G S+E  L  
Sbjct: 193 LPDSHYRIDLAAEPSLLSSGWQGIVIADSEGRIVGCNPMAKQLLSQAK-LGDSLELHLGD 251

Query: 252 PQTHASFIYTTTPLH----------SKQHRTRALTPASDL--HFGDAEVERCWQQANRVI 299
             T A   +    LH          +K  +T    P S L   F D  +ER WQQAN+VI
Sbjct: 252 SWTRAGGFHRDLALHLHTQALGVTQTKSAKTIQDKPQSQLGVRFRDPLLERAWQQANKVI 311

Query: 300 DKDIRLLILGQTGVGKNEFVKALHKNSQRKNGPLVAVNCGALAKELVEAELFGYVAGAFT 359
            K I LL+LG+TGVGK +FVK LH  S R+  PLVAVNC AL  ELVE+ELFGY AGAFT
Sbjct: 312 TKQIPLLVLGETGVGKEQFVKKLHAQSSRRAQPLVAVNCAALPAELVESELFGYQAGAFT 371

Query: 360 GASHKGYQGKVRLADKGILFLDEIADLPLDAQSRLLHVLQDKTVLPVGSNHATKVDIQII 419
           GA+  G+ GK+R A  G LFLDEI ++P  AQSRLL VLQ++ V+PVGSN + KVDIQII
Sbjct: 372 GANRSGFIGKIRQAHGGFLFLDEIGEMPQAAQSRLLRVLQEREVVPVGSNQSVKVDIQII 431

Query: 420 AATHKNLEQLVTQGLFRQDLYYRLSDLVVELPSFQQRQDRQALIHHIHRRYSDAGQQICG 479
           AATH +LE LV QGLFRQDL+YRL+ L V LP+ ++RQD + +IH +HRR+    Q +C 
Sbjct: 432 AATHMDLESLVAQGLFRQDLFYRLNGLQVRLPALRERQDIERIIHKLHRRHRSGPQTLCT 491

Query: 480 DLMQRLLAYHWPGNLRELDSLIKVASLMAEGEGVLTFNHLPTHLAQKLSHAAPTATEDDQ 539
           +L+ +L+ Y WPGNLRELD+L++VA LMAE + VL   HLP HLA+KL +  P A  + Q
Sbjct: 492 ELLGQLMRYDWPGNLRELDNLMQVACLMAEDDEVLARAHLPEHLAKKLVN-KPLAVYERQ 550

Query: 540 QKD------------------IKSTVEASLLKTYQATQGNISQTSRLLGLSRNTIYRKLK 581
             +                  +   +  ++L+ Y+A +GN+SQ ++ LG+SRN +YRKLK
Sbjct: 551 HVENPQNPRDKDDIGRHSADSLHGAINQNVLQAYRACEGNVSQCAKRLGISRNALYRKLK 610

Query: 582 ALGI 585
            LGI
Sbjct: 611 QLGI 614