Pairwise Alignments

Query, 587 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 471 a.a., nitrogen regulation protein NR(I) (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  191 bits (486), Expect = 4e-53
 Identities = 136/395 (34%), Positives = 214/395 (54%), Gaps = 37/395 (9%)

Query: 218 ADESGQILAHNQVAGQLLAQGRVIGQSVEQVLPRPQTHASFIYTTTPLHSKQHRTRALTP 277
           +D    + A+   A + L +   I +++  V  R  THA+    T      Q +T  +  
Sbjct: 86  SDLDSAVSAYQAGAFEYLPKPFDIDEAISLV-ERALTHATEQSPTPVAQETQVKTPEI-- 142

Query: 278 ASDLHFGDAE-VERCWQQANRVIDKDIRLLILGQTGVGKNEFVKALHKNSQRKNGPLVAV 336
                 G+A  ++  ++   R+    I +LI GQ+G GK     ALHK+S RK+ P +A+
Sbjct: 143 -----IGEAPAMQEVFRAIGRLSRSSISVLINGQSGTGKELVAGALHKHSPRKDKPFIAL 197

Query: 337 NCGALAKELVEAELFGYVAGAFTGASHKGYQGKVRLADKGILFLDEIADLPLDAQSRLLH 396
           N  A+ K+L+E+ELFG+  GAFTGA++   QG+   A+ G LFLDEI D+PLD Q+RLL 
Sbjct: 198 NMAAIPKDLIESELFGHEKGAFTGAANVR-QGRFEQANGGTLFLDEIGDMPLDVQTRLLR 256

Query: 397 VLQDKTVLPVGSNHATKVDIQIIAATHKNLEQLVTQGLFRQDLYYRLSDLVVELPSFQQR 456
           VL D     VG + A +VD++IIAATH++LEQLV +G FR+DL++RL+ + + LP   QR
Sbjct: 257 VLADGQFYRVGGHSAVQVDVRIIAATHQDLEQLVLKGGFREDLFHRLNVIRIHLPPLSQR 316

Query: 457 QD--RQALIHHIHRRYSDAGQQ---ICGDLMQRLLAYHWPGNLRELDSLIKVASLMAEGE 511
           ++   Q   H +     + G +   +  +   +L    WPGN+R+L++  +  ++MA G+
Sbjct: 317 REDIPQLASHFLASAAKEIGVEAKILTKETAAKLSQLPWPGNVRQLENTCRWLTVMASGQ 376

Query: 512 GVLTFNHLPTHLAQKLSHAAPTA----------TEDDQQK----------DIKSTVEASL 551
            +L    LP  L ++ +   P A          TE   QK          +++   E  L
Sbjct: 377 EILP-QDLPPELLKEPTSINPMAKGSQDWQSALTEWIDQKLSEGNSDLLTEVQPAFERIL 435

Query: 552 LKT-YQATQGNISQTSRLLGLSRNTIYRKLKALGI 585
           L+T  + TQG+  + ++ LG  RNT+ RKLK L +
Sbjct: 436 LETALRHTQGHKQEAAKRLGWGRNTLTRKLKELSM 470