Pairwise Alignments

Query, 587 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 488 a.a., sigma-54 dependent transcriptional regulator/sensory box protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  193 bits (491), Expect = 1e-53
 Identities = 113/314 (35%), Positives = 192/314 (61%), Gaps = 13/314 (4%)

Query: 280 DLHFGDAEVERCWQQANRVIDKDIRLLILGQTGVGKNEFVKALHKNSQRKNGPLVAVNCG 339
           D+  G A +    QQ + V + D  +LI G+ G GK    + LH+ S+RK+ P+++VNC 
Sbjct: 176 DISGGSAVIRHMIQQLHMVANTDSTVLICGENGTGKELVARNLHQLSRRKDKPMISVNCA 235

Query: 340 ALAKELVEAELFGYVAGAFTGASHKGYQGKVRLADKGILFLDEIADLPLDAQSRLLHVLQ 399
           A +  L+E+ELFG+  GAFTGA+ +  +G+  LA +G LFLDE+A+L L+AQS+LL V+Q
Sbjct: 236 AFSASLLESELFGHEKGAFTGATSQR-KGRFELAHQGTLFLDEVAELSLEAQSKLLRVIQ 294

Query: 400 DKTVLPVGSNHATKVDIQIIAATHKNLEQLVTQGLFRQDLYYRLSDLVVELPSFQQR-QD 458
           +++   +G +   KVDI+++AA+H +L + V QGLFR DLYYRL+   +++P  + R  D
Sbjct: 295 EQSFERLGGSETIKVDIRLVAASHHDLLKRVEQGLFRMDLYYRLNVFPIQVPPLRARLGD 354

Query: 459 RQALIHHI-HRRYSDAGQQICG---DLMQRLLAYHWPGNLRELDSLIKVASLMAEGEGVL 514
              L+ HI H      G++I G     +++L+ Y WPGN+REL ++++  +++++ + +L
Sbjct: 355 MPELVSHILHTLNRKLGKKIRGVSQKGLKKLMTYSWPGNVRELQNILEREAILSQTD-IL 413

Query: 515 TFNHLPTHLAQKLSHAAPTAT-EDDQQKDIKSTVEASLLKTYQATQGNISQTSRLLGLSR 573
             + +PTH  Q  + A+P  T  + + + I+ T     LK         +  + +LG+  
Sbjct: 414 HIHAMPTHHLQTQTAASPLQTLAEAEAQHIEQT-----LKQLNWRISGANGAANVLGVPP 468

Query: 574 NTIYRKLKALGILK 587
           +T+  ++K LGI +
Sbjct: 469 STLRSRMKKLGITR 482