Pairwise Alignments

Query, 587 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 662 a.a., AAA family ATPase from Klebsiella michiganensis M5al

 Score =  221 bits (564), Expect = 6e-62
 Identities = 179/573 (31%), Positives = 291/573 (50%), Gaps = 86/573 (15%)

Query: 71  DSRLILTDQHGVIIGSWGQARFREKLSQIALSSGACWQEPIKGTNAIGTALIEQKPISVI 130
           D  + LTD +GVI+   GQ      L+ I    G+   E ++GTN  G  L E K + ++
Sbjct: 106 DGHINLTDANGVIVHFCGQ-----DLTPI----GSILCEAVQGTNCTGRCLKENKLVYLL 156

Query: 131 GEQHFIQHHHFIS--CSASPIFDYTGQLIGVLDITSEQ---QKHTLSTQVVVQNMV--QL 183
             +++ +        C+A+PI D  G ++GVL +T+       HTL T       +  QL
Sbjct: 157 SAENYKEALRLRGKHCAAAPIRDENGVMLGVLTLTANPGCFHYHTLGTVQAAAEAISQQL 216

Query: 184 VENQLLNQIPHGHVRIDLACEPSLLSSGWQGVIIADESGQILAHNQVAGQLLA-QGRVIG 242
           +  +L+N+            + S++ S  +GV++  E G I   N  A Q+L  Q  V  
Sbjct: 217 ILRRLVNE------------QESVMESLNEGVLVISEQGSIRQLNCYARQVLGIQEDVRF 264

Query: 243 QSVEQVL---------------------PRPQTHASFIYT--TTPLHSK------QHRTR 273
           +  ++VL                     P   +  S + +  TTP   +        R R
Sbjct: 265 RDADEVLRPDGCSLKELPACKDRYITLCPVADSRISCVISVVTTPEGGRVISMRDNRRVR 324

Query: 274 ALT------PAS---DLHFGDAEVERCWQQANRVIDK-DIRLLILGQTGVGKNEFVKALH 323
            +T       AS   D+  G + V +  +   R + + D  +L+ G++G GK  F +++H
Sbjct: 325 DMTHRVIGSSASYNFDMILGQSRVMQDMRNKARSVGRSDSTVLLTGESGTGKELFAQSIH 384

Query: 324 KNSQRKNGPLVAVNCGALAKELVEAELFGYVAGAFTGASHKGYQGKVRLADKGILFLDEI 383
             S R  GP +AVNCGA+ ++LV++ELFGY  GAFTG+   G  GK  LAD G LFLDEI
Sbjct: 385 NGSHRNAGPFLAVNCGAIPRDLVQSELFGYEDGAFTGSRRGGVAGKFELADGGTLFLDEI 444

Query: 384 ADLPLDAQSRLLHVLQDKTVLPVGSNHATKVDIQIIAATHKNLEQLVTQGLFRQDLYYRL 443
            D+PL+AQ+ LL VLQ+  V+ +G     KV+++IIAAT+++L++ +  G FR+DLY+RL
Sbjct: 445 GDMPLEAQASLLRVLQEGEVMRIGGKRPLKVNVRIIAATNRDLKKDIEHGSFRRDLYFRL 504

Query: 444 SDLVVELPSFQQR-QDRQALIHHIHRRYSDA---GQQICGDLMQRLL-AYHWPGNLRELD 498
           + + + +P  ++R +D + L      +   A    + +  D   +++ +Y WPGN+REL+
Sbjct: 505 NVISLPIPPLRERKEDIKELTDWFCEKVCRALGRNRALFSDSALKVMESYDWPGNVRELE 564

Query: 499 SLIKVASLMAEGEGVLTFN-----HLPTHLAQKLSHAAPTATEDDQQKDIKST-VEASLL 552
           ++++    + E E +   +     HLPT+     S     +T++   KD + T +E  L+
Sbjct: 565 NIVERTINLTEIEEIRDKDLPEELHLPTY---SDSEIPGWSTKNYCLKDSEKTLIERCLV 621

Query: 553 KTYQATQGNISQTSRLLGLSRNTIYRKLKALGI 585
           +     QGN+ Q +  L LSR  +Y KLK  GI
Sbjct: 622 E----KQGNLRQVAIALNLSRGALYNKLKRYGI 650