Pairwise Alignments

Query, 587 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 675 a.a., Fis family transcriptional regulator from Herbaspirillum seropedicae SmR1

 Score =  315 bits (808), Expect = 3e-90
 Identities = 222/653 (33%), Positives = 318/653 (48%), Gaps = 98/653 (15%)

Query: 16  SWQRSEQAGLTQQSRAQDIRLSDNKLK---ERRQELAGLIDTVSRFALPLFYQLFAHSDS 72
           S QRS   G+ +  R     LS   L    E  Q L+G     +R  +   Y    ++ S
Sbjct: 36  SHQRSSSYGIMRGQRPDLDSLSRADLAQTLEANQTLSGH----ARPVMETLYDQIRNTHS 91

Query: 73  RLILTDQHGVIIGSWGQARFREKLSQIALSSGACWQEPIKGTNAIGTALIEQKPISVIGE 132
            +IL+D  G I+ + G + F  K  ++AL  G  W E ++GTNAIGTAL EQKP +V  +
Sbjct: 92  MVILSDAEGTILHTLGDSDFLAKADRVALGPGGRWSEQLRGTNAIGTALFEQKPTTVHAQ 151

Query: 133 QHFIQHHHFISCSASPIFDYTGQLIGVLDITSEQQKHTLSTQVVVQNMVQLVENQLLNQI 192
           QH++  + F++CSA+PIFD+ GQ++GVLD++ E       T  +V+   Q++EN LL   
Sbjct: 152 QHYLDANRFLTCSAAPIFDHRGQVLGVLDVSGECGSFHKHTMALVRMSAQMIENHLLAGS 211

Query: 193 PHGHVRIDLACEPSLLSSGWQGVIIADESGQILA-------------------------- 226
               + +        + +  +G++     G+ LA                          
Sbjct: 212 FPDCITLHFHSRAEFVGTLVEGIVSFTPGGRFLAANRSAQFQLGLTLAALQSHTFASLFG 271

Query: 227 ---------HNQVAGQLL-------------AQGRVIGQSV----EQVLPRPQTHASFIY 260
                    H + A  LL             A+ R+  Q      E V+  P        
Sbjct: 272 VPLSLLFEHHRKAAPGLLELCLHNGIRIHGRAELRLRDQHFQAAREAVIDAPGLLPPAPN 331

Query: 261 TTTPLHSK-----QHRTRALTPASDLHFGDAEVERCWQQANRVIDKDIRLLILGQTGVGK 315
           TTTP  S      +H+ R    A D   GD  +     +  RVID+DI +LI G+TG GK
Sbjct: 332 TTTPPPSPPQQRARHQRRPDLQALDT--GDVRMSAIIAKLRRVIDRDIPILITGETGTGK 389

Query: 316 NEFVKALHKNSQRKNG--------PLVAVNCGALAKELVEAELFGYVAGAFTGASHKGYQ 367
               +A+H +S R           P VAVNC A+ + L+EAELFGY  GAFTGA  KG  
Sbjct: 390 EWLAQAIHGDSARFGARQNRAGAAPFVAVNCSAIPENLIEAELFGYEDGAFTGARRKGAL 449

Query: 368 GKVRLADKGILFLDEIADLPLDAQSRLLHVLQDKTVLPVGSNHATKVDIQIIAATHKNLE 427
           GK+  A  G LFLDEI D+PL  Q RLL VLQ++ V P+GS     VD  ++ AT++ L 
Sbjct: 450 GKIAQAHGGTLFLDEIGDMPLALQGRLLRVLQERAVTPLGSQRVIPVDFALVCATNQPLR 509

Query: 428 QLVTQGLFRQDLYYRLSDLVVELPSFQQRQDRQALIHHI-------HRRYSDAGQQICGD 480
           ++  +  FR+DLYYR++ L V+LP+ + R D   LI  I       H    DA  Q    
Sbjct: 510 EMAARHAFREDLYYRINGLQVKLPALRDRSDLPQLIERILEDEGGPHAPRFDAQAQAL-- 567

Query: 481 LMQRLLAYHWPGNLRELDSLIKVASLMAEGEGVLTFNHLPTHLAQKLSHAAPTATEDDQQ 540
               LLA HWPGNLR+L +L++ +  MAEGE  +  +HLP    ++    AP A  D   
Sbjct: 568 ----LLASHWPGNLRQLANLVRTSLAMAEGEEAIGPHHLPDDFLEEA--GAPGALHDGMH 621

Query: 541 K---------DIKSTVEASLLKTYQATQGNISQTSRLLGLSRNTIYRKLKALG 584
                      I+    A++ +  +   GN+S  ++ LG+SRNTIYR+LK+ G
Sbjct: 622 TMHAVRSDCLSIQDNEWAAIERALRTHAGNVSAAAKALGVSRNTIYRRLKSRG 674