Pairwise Alignments

Query, 587 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 454 a.a., sigma-54 dependent transcriptional regulator/response regulator (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  187 bits (474), Expect = 1e-51
 Identities = 111/311 (35%), Positives = 174/311 (55%), Gaps = 22/311 (7%)

Query: 290 RCWQQANRVIDKDIRLLILGQTGVGKNEFVKALHKNSQRKNGPLVAVNCGALAKELVEAE 349
           + + +   + D  + +L+LG +G GK     ALH+ S+R++ P + +NC AL ++L+E+E
Sbjct: 149 KVFDRIRALADACVPVLVLGPSGSGKELVAGALHRRSKRRDRPFIKINCAALPEQLLESE 208

Query: 350 LFGYVAGAFTGASHKGYQGKVRLADKGILFLDEIADLPLDAQSRLLHVLQDKTVLPVGSN 409
           LFG+  GAFTGA      GK   AD G LF DE+ ++PL  Q++LL VL+D+ V PVG N
Sbjct: 209 LFGHEKGAFTGAQQARI-GKFEAADGGTLFFDEVGEMPLPLQAKLLRVLEDQEVTPVGGN 267

Query: 410 HATKVDIQIIAATHKNLEQLVTQGLFRQDLYYRLSDLVVELPSFQQRQDRQALIHH---- 465
              KV+++ + AT +NLE+ +  G FR+DLYYR++ + V LP  ++R    AL+      
Sbjct: 268 TPRKVNVRTVFATARNLEEAIADGRFREDLYYRINVVPVTLPPLRERGSDVALLTERFLR 327

Query: 466 ----IHRRYSDAGQQICGDLMQRLLAYHWPGNLRELDSLIKVASLMAEGEGVLTFNHLPT 521
               +H R +   +Q        LLAY +PGN+REL + ++ A L+   EG +   HLP 
Sbjct: 328 RFCALHERQATLSEQ----ARLALLAYDYPGNVRELRNAVEHAVLLCT-EGEIHVGHLPE 382

Query: 522 HLAQKLSHAAPTATEDDQQKDIKSTVEA-------SLLKTYQATQGNISQTSRLLGLSRN 574
            + +  + + P A +DD      S  E         +++  + T G   Q + LLG+SR 
Sbjct: 383 RI-RAATQSMPPACDDDAGDTPASLAEGVARFERRRIMEALERTGGRKIQAADLLGISRK 441

Query: 575 TIYRKLKALGI 585
            ++ KLK L I
Sbjct: 442 QLWLKLKELSI 452