Pairwise Alignments

Query, 587 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 472 a.a., sigma-54 dependent transcriptional regulator/response regulator (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  200 bits (508), Expect = 1e-55
 Identities = 122/331 (36%), Positives = 181/331 (54%), Gaps = 24/331 (7%)

Query: 278 ASDLHFGDAEVERCWQQANRVIDKDIRLLILGQTGVGKNEFVKALHKNSQRKNGPLVAVN 337
           A +L    A + R  +Q  RV   D  +LI G+ G GK    +A+H  SQR   PLVAVN
Sbjct: 140 ADELIGESAPMRRIREQIARVAPTDAWVLITGENGTGKELAARAVHAGSQRATRPLVAVN 199

Query: 338 CGALAKELVEAELFGYVAGAFTGASHKGYQGKVRLADKGILFLDEIADLPLDAQSRLLHV 397
           C A+ +EL+E+ELFG+  GAFTGA      GK  +A +G LFLDEI D+ L  Q+++L +
Sbjct: 200 CAAIPEELIESELFGHEKGAFTGAE-SARTGKFEMAHRGTLFLDEIGDMSLKTQAKILRI 258

Query: 398 LQDKTVLPVGSNHATKVDIQIIAATHKNLEQLVTQGLFRQDLYYRLSDLVVELPSFQQRQ 457
           LQ+++   VG     +VD++++AAT+KNLE+ + QG FR+DLYYRL    + LP+ ++R 
Sbjct: 259 LQEQSFEKVGGTRTIRVDVRVVAATNKNLEEQIAQGTFREDLYYRLRVFPLSLPALRERG 318

Query: 458 D-----RQALIHHIHRRYSDAGQQICGDLMQRLLAYHWPGNLRELDSLIKVASLMAEGEG 512
           D       A +  + R ++ A      D    LL Y WPGN+REL + ++   ++  GE 
Sbjct: 319 DDILRLLDAFMLRLCRDHAFAPLTFTDDAQDVLLRYRWPGNVRELRNFVERMLILHAGES 378

Query: 513 VLTFNHLPTHLAQKLSHAAPTATEDDQQK-------------DIKSTVEA----SLLKTY 555
           V     LP    + LS ++ +AT    Q              D K+   A     L +  
Sbjct: 379 V-DVEDLPPECLRDLSPSSDSATGTAAQSATATCGTGVDGILDFKAARNAFETRFLAEQL 437

Query: 556 QATQGNISQTSRLLGLSRNTIYRKLKALGIL 586
           Q   GN+S+ +  +GL R+ ++RKLK  GI+
Sbjct: 438 QECGGNVSRLAERIGLERSHLHRKLKGYGII 468