Pairwise Alignments

Query, 587 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 473 a.a., sigma-54 dependent transcriptional regulator (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  213 bits (543), Expect = 1e-59
 Identities = 120/293 (40%), Positives = 182/293 (62%), Gaps = 9/293 (3%)

Query: 297 RVIDKDIRLLILGQTGVGKNEFVKALHKNSQRKNGPLVAVNCGALAKELVEAELFGYVAG 356
           RV   D  +LILG+TGVGK+ F +  H+ S R +   + V+CG++A+ L+E+ELFGYV G
Sbjct: 164 RVAATDANILILGETGVGKDVFARLAHEYSPRSSKMFLKVDCGSIAENLIESELFGYVPG 223

Query: 357 AFTGASHKGYQGKVRLADKGILFLDEIADLPLDAQSRLLHVLQDKTVLPVGSNHATKVDI 416
           AF+GAS KG  G   +AD G +FLDEI +LPL  Q++LL VLQD+ V+ VGS+ A KVD+
Sbjct: 224 AFSGASSKGKAGYFEIADGGTVFLDEIGELPLPMQAKLLRVLQDREVMRVGSSQARKVDV 283

Query: 417 QIIAATHKNLEQLVTQGLFRQDLYYRLSDLVVELPSFQQR-QDRQALIHHIHRRYS---D 472
           +IIAAT+++L +    G FR DLYYRL+  V++LP  ++R QD   L+     R++    
Sbjct: 284 RIIAATNRDLAEDAKAGKFRSDLYYRLNVAVLDLPPLRERQQDIIPLVERFLDRFNAKYR 343

Query: 473 AGQQICGDLMQRLLAYHWPGNLRELDSLIKVASLMAEGEGVLTFNHLPTHL---AQKLSH 529
               +     Q L  Y WPGN+RE+ +LI+   +  EG  +    HLP H+   A+  + 
Sbjct: 344 RNMTLPKGTRQALQNYKWPGNVREMQNLIQSLVVTCEGHSIKP-EHLPPHIQKAARNRTA 402

Query: 530 AAPTATEDDQQ-KDIKSTVEASLLKTYQATQGNISQTSRLLGLSRNTIYRKLK 581
             P A +D +  K+I + +E  +L+    T G++ + +R+  +SR T++RKL+
Sbjct: 403 YTPPAPDDARPLKEIMADIEREILEEAVRTHGSVCKVARMYKISRTTLFRKLR 455