Pairwise Alignments

Query, 587 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 551 a.a., sigma-54 dependent transcriptional regulator (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  193 bits (491), Expect = 1e-53
 Identities = 118/310 (38%), Positives = 178/310 (57%), Gaps = 16/310 (5%)

Query: 290 RCWQQANRVIDKDIRLLILGQTGVGKNEFVKALHKNSQRKNGPLVAVNCGALAKELVEAE 349
           R   Q + V   D  +L+ G++G GK    +A+H+ SQR   PLV VNC A+ +EL E+E
Sbjct: 234 RVLAQVDMVAPTDATVLVQGESGTGKELVAEAIHRRSQRSTAPLVRVNCSAIPRELFESE 293

Query: 350 LFGYVAGAFTGASHKGYQGKVRLADKGILFLDEIADLPLDAQSRLLHVLQDKTVLPVGSN 409
            FG+V GAFTGA      G+ ++AD G LFLDE+ ++PL+ Q +LL VLQ+ T   VG +
Sbjct: 294 FFGHVKGAFTGAVRDRI-GRFQMADGGTLFLDEVGEIPLELQGKLLRVLQEGTFERVGED 352

Query: 410 HATKVDIQIIAATHKNLEQLVTQGLFRQDLYYRLSDLVVELPSFQQRQ-DRQALIHHI-- 466
               VD++IIAAT+++L Q V  G FRQDL++RLS   VELP  + RQ D   L  H   
Sbjct: 353 RTRSVDVRIIAATNRDLRQEVDAGRFRQDLFFRLSVFPVELPPLRDRQGDIPLLARHFIA 412

Query: 467 --HRRYSDAGQQICGDLMQRLLAYHWPGNLRELDSLIKVASLMAEGEGVLTFNHLPTHLA 524
              RR      ++    + RL AY WPGN+RE+ ++I+ A +MAE EG L  + LP    
Sbjct: 413 QSSRRLGLPTPRLTPAALARLSAYPWPGNVREMQNVIERAVIMAE-EGALGMDALPAPEG 471

Query: 525 QK------LSHAAPTATEDDQQKDIKSTVEASLLKTYQATQG---NISQTSRLLGLSRNT 575
            +      ++  AP AT    +++ ++    ++ +  QA +G    +   + LLG+   T
Sbjct: 472 LRHDDRVSVAAPAPGATTIVTEEEWRTMQRDNIRRALQAAEGRVHGVGGAAELLGIPPTT 531

Query: 576 IYRKLKALGI 585
           +  +++ALG+
Sbjct: 532 LRSRMQALGL 541